Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g3439 ATGGACTGGATTGAAAAAATCACAGGTGTTATTGCCTCTTTGCTGAGTTCTCAGATTCCTGAAAGGTTGTTACCGGCAAGTCCAATGGGAAGCGGTCATCATAGGTCTACCAGTGAGAGTAGTTCTTTTGAAAGTTCAGATTTTGTTCACTATGCTGTTGAAGAAAGTGCAGCTGATAGAAGTTTTGCGTCTGCACATCTGGAGCGCGCCTCTAGAAGTATGAACCAACAACGGTCCTGTAATAAAAGCGAGAAACCAATTGATGTGTTGCGAAAAGTTATTGGCAATGATAAATGTGCTGATTGTGGGGCCCCTGAACCGGATTGGGCATCACTAAATCTTGGCGTTCTTGTTTGCATTGAATGTTCTGGTGTTCATCGAAACCTTGGTGTGCACATATCGAAGGTTCGCTCTCTTACATTGGACGTTAAGGTTTGGGAACCTTCTGTGATAACTTTATTTCAGTCTCTTGGGAATACTTTTGCCAACTCTGTCTGGGAGGAACTGTTGCAATCAAGAAGTGCCTTTCAGGTTGATCTTGTCCCTACAGGCTCAAGCAAGTCCGATAAGTCACTGACGGGTTTCATCACCAAACCTAGTCAATATGATTCTCTATCGGTGAAGGAAAAATTCATCCAGGCAAAGTATGCGGAGAAGATTTTTGTTCGCAAGCCAAAGGACAATCAATACCGACTGTTAGTGGCACAACAAATCTGGGAGGCTGTTCGTGCTAACGACAAGAAAAAATCTAATTAA 756 0.4299 MDWIEKITGVIASLLSSQIPERLLPASPMGSGHHRSTSESSSFESSDFVHYAVEESAADRSFASAHLERASRSMNQQRSCNKSEKPIDVLRKVIGNDKCADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVRSLTLDVKVWEPSVITLFQSLGNTFANSVWEELLQSRSAFQVDLVPTGSSKSDKSLTGFITKPSQYDSLSVKEKFIQAKYAEKIFVRKPKDNQYRLLVAQQIWEAVRANDKKKSN* 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g3439 251 PANTHER CENTAURIN/ARF 1 249 IPR045258 GO:0005096
Tpr6g3439 251 SUPERFAMILY ArfGap/RecO-like zinc finger 84 224 IPR037278 -
Tpr6g3439 251 CDD ArfGap 87 216 - -
Tpr6g3439 251 Gene3D Arf GTPase activating protein 64 231 IPR038508 -
Tpr6g3439 251 PRINTS HIV Rev interacting protein signature 96 115 IPR001164 GO:0005096
Tpr6g3439 251 PRINTS HIV Rev interacting protein signature 115 132 IPR001164 GO:0005096
Tpr6g3439 251 PRINTS HIV Rev interacting protein signature 138 159 IPR001164 GO:0005096
Tpr6g3439 251 Pfam Putative GTPase activating protein for Arf 87 224 IPR001164 GO:0005096
Tpr6g3439 251 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD1 1 249 - -
Tpr6g3439 251 SMART arf_gap_3 84 229 IPR001164 GO:0005096
Tpr6g3439 251 ProSiteProfiles ARF GTPase-activating proteins domain profile. 84 229 IPR001164 GO:0005096
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g3439 Tpr-Chr6 37153521 37156206 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g3439 96 223 C2H2 Transcription Factor Family AT4G21160 41.860 1.23e-22 93.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g3439 K12489 - gmx:100798227 423.705