Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g3427 ATGGCGGCGGCACGGCGGCTCCGTGAGCTTCAATCAGACCAATCAAACAAGATCTGCGTGGACTGTTCACAAAAGAATCCACAATGGGCATCCGTTTCCTACGGAATTTTCATGTGTCTAGAATGTTCCGGAAAACACCGTGGCCTCGGCGTTCACATCTCCTTCGTCCGATCTGTTACAATGGATTCATGGTCCGATCTCCAGATCAAGAAAATGGAAGCAGGTGGTAACCGTAATCTCAATTCCTTCCTCGCTCAATACGGAATCTCTAAGGAAACTGATATCGTTACTAAGTACAATTCAAACGCTGCTTCGATTTATCGCGATCGGATTCAAGCTCTTGCTGAAGGTCGTTCATGGCGGGATCCACCTGTTGTTAAGGAGAATTCGAATTCGAATGCGAATAATAATCGTCCTGGAAAAGGGAAGCCGCCTCTGGCTTCGTCGAATGGAAGTGGTTGGGATGATAATTGGGATAATGATGATAGTTATGGATCTCGTGCTGATATAAGGAGGAATCAGAGTACTGGTGATGTTATGGGATTTGTTGGTGGTGGTGGCGGTGTTACCCCGTCGAGGTCTAAATCGACGGAGGATATTTATACGAGGACTCAATTGGAAGCTTCTGCTGCTAATAAGGAAGGATTCTTTGCGAGGAAGATGGCGGAGAATGAATCGCGACCGGAGGGACTTCCGCCTTCTCAGGGTGGGAAGTATGTTGGGTTTGGATCTAGTCCTGGTCCTGCTCAGAGGATATCTCCTCAAAATGATTATTTATCTGTTGTTTCTGAGGGAATTGGTAAATTATCGATGGTTGCTCAATCTGCAACCAAGGAGATCACTGCCAAGGTAAAGGACGGCGGTTATGATCACAAGGTCAATGAAACTGTCAATATTGTCACTCAGAAGACATCAGAGATTGGACACAGGACATGGGGTATAATGAAAGGGGTCATGGCATTGGCCACACAAAAGGTTGAGGAACTCACCAAAGATTACCCGAATGGGAACTCTGATAACTGGCAACGAAATGAAAATGATAGACATGATTTCAATCAAGATAATAAAAGCTGGAATTCTTCTACTAGAGAAGGACAACCTTCATCAGGTGGACAAAGTAATACTTACCACTCAAACTCTTGGGATGATTGGGACAATCAAGATACAAAGAAGGAAGTACCAGCTAAAGGCTCAGCTCCTCATAAGAATGATGATTGGGCTGGTTGGGATGATGGCAAGGATGATGACGAATATGATAATAAATCTTTTGGTCATAATGGGACGTCAGGTACTGGCTGGACAGGAGGAGGCTTTCACTAA 1320 0.4492 MAAARRLRELQSDQSNKICVDCSQKNPQWASVSYGIFMCLECSGKHRGLGVHISFVRSVTMDSWSDLQIKKMEAGGNRNLNSFLAQYGISKETDIVTKYNSNAASIYRDRIQALAEGRSWRDPPVVKENSNSNANNNRPGKGKPPLASSNGSGWDDNWDNDDSYGSRADIRRNQSTGDVMGFVGGGGGVTPSRSKSTEDIYTRTQLEASAANKEGFFARKMAENESRPEGLPPSQGGKYVGFGSSPGPAQRISPQNDYLSVVSEGIGKLSMVAQSATKEITAKVKDGGYDHKVNETVNIVTQKTSEIGHRTWGIMKGVMALATQKVEELTKDYPNGNSDNWQRNENDRHDFNQDNKSWNSSTREGQPSSGGQSNTYHSNSWDDWDNQDTKKEVPAKGSAPHKNDDWAGWDDGKDDDEYDNKSFGHNGTSGTGWTGGGFH* 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g3427 439 MobiDBLite consensus disorder prediction 383 422 - -
Tpr6g3427 439 MobiDBLite consensus disorder prediction 355 382 - -
Tpr6g3427 439 CDD ArfGap_ArfGap1 3 117 - -
Tpr6g3427 439 SUPERFAMILY ArfGap/RecO-like zinc finger 5 114 IPR037278 -
Tpr6g3427 439 SMART arf_gap_3 4 120 IPR001164 GO:0005096
Tpr6g3427 439 Gene3D Arf GTPase activating protein 1 135 IPR038508 -
Tpr6g3427 439 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD6-RELATED 1 438 IPR044519 GO:0005096|GO:0016192
Tpr6g3427 439 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD6-RELATED 1 438 - -
Tpr6g3427 439 PRINTS HIV Rev interacting protein signature 16 35 IPR001164 GO:0005096
Tpr6g3427 439 PRINTS HIV Rev interacting protein signature 35 52 IPR001164 GO:0005096
Tpr6g3427 439 PRINTS HIV Rev interacting protein signature 56 77 IPR001164 GO:0005096
Tpr6g3427 439 MobiDBLite consensus disorder prediction 125 143 - -
Tpr6g3427 439 MobiDBLite consensus disorder prediction 332 439 - -
Tpr6g3427 439 MobiDBLite consensus disorder prediction 171 198 - -
Tpr6g3427 439 ProSiteProfiles ARF GTPase-activating proteins domain profile. 4 120 IPR001164 GO:0005096
Tpr6g3427 439 MobiDBLite consensus disorder prediction 118 157 - -
Tpr6g3427 439 Pfam Putative GTPase activating protein for Arf 5 101 IPR001164 GO:0005096
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g3427 Tpr-Chr6 37009662 37014657 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g3427 5 87 C2H2 Transcription Factor Family AT4G21160 47.619 1.68e-21 93.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr6g3427 6 37009662 37014657 Tpr6g3427 6 37009662 37014657 ECH
Tpr6g3427 6 37009662 37014657 Tpr1g4095 1 46806992 46810799 PCT