Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g3413 ATGCTCTTTTGCGGCATGAACCACTGTGTTCCTGATTTCAATTCTCAAATGGATCAACAACTGTTACCTCGCCCTAAGAAACCCTTCATTGCAGACGATGAGATTATGGAGCTGTTATGGCAAAACGGTCAAGTTGTAACGCAGAGTCAAAACAATCGTCATGTGAACAAACAACCGCCGGGGAGAAACTCTGACGGTGGAACTTCATCTGAAGTGGAAAATAACAATCAATTTCTCTTCATGCAAGAAGGTGAAATGGCTTCGTGGCTTCATTATCCAATCAACAATGATCATGATGATGATCATGATTCTCCCTTCTCCGCCGATTTTCTCAACAATAACAACAACAGTAGCATGCAAACTCCTCACCGGACTTCTCAATTGACTGAACTCCGGAGGAATCCGATGTCGGTGGCTCCTTCTCGTCCTCCGAATCCGCTACAACGGAGATCCGAGCAAGTGCAGCCTAATTTCGCGTACTTTGCTAGGCACGGTGTTAGAGCTGAGCCAGGATCATCGTCGATTTTGAGAAATTCTGCGAGGGAATCAACGGTGGTAGATTCGTGTGATACGCCGGCTACGATGCTGGCGGCAGGTTCAGAGACTTTACGAAGCTTAGCGGATCATACGGAAGGAGAAACCGGAGTGTCGGCGCCTTCAACGACGATGTTTGATGAACCGGGCGGTTCGAGTAGTAGTGGCGAACCGGTTCAGAAGTTAGGGGAGCAGGATCGGAAGAGGAAGGGAAGAGAAACGGAGGAATGGGAATATCAGAGCGAGGATGTCGATTTTGAATCTGCGGAAGCCAAAAAAAATGTCAGTGGATCATCTACAAAGAGATCTCGTGCTGCTGAGGTCCATAATCTCTCAGAAAGGAGGCGTCGTGATCGGATTAATGAAAAGATGAAAGCTCTGCAAGAACTTATACCTCGATCTAATAAATTTGACAAAGCTTCTATGCTGGATGAAGCAATTGAATACTTGAAGTCACTTCAGTTACAAGTTCAGAGAGTACAACTTATGCAGATGATGTCCATGGGATGTGGCATGGTACCGATGATGTTTCCTGGAATCCAGCAGTATATGCCAACAATTGGAATGGGGATGGGGATGGGAATGGGTATGGGAATGGGTATGGAAATGGGAATAAACAGACCAATAATGCCATTTCCAAATATGTTATCTGGTTCTGCTTTGCCTGCAGCTGCAAATTTGGGACCAAGGTTCGCGGCCATGCCCCCTTTCCACGTGCCGCATGTTCCTATACCTGATTCATCCAGAATGCAAGCAACAAATCAGGCAGTTAATAATATTTTAACCTCAGTTGGAACATATGATTCAAATCAGTCACATATACCAAACTTCACTGATCCTTATCAACAATACCTTGGACCCCACCAGATGCAGTTTCAATCAATGCAGAGTCGGGCAATGAACCAACCAAATGTCGGCAAGCCAAGTATCACTAGGCCCCTTGAGAATCCAGAAATCCACCAGTCAGGAGATAAATGA 1512 0.4563 MLFCGMNHCVPDFNSQMDQQLLPRPKKPFIADDEIMELLWQNGQVVTQSQNNRHVNKQPPGRNSDGGTSSEVENNNQFLFMQEGEMASWLHYPINNDHDDDHDSPFSADFLNNNNNSSMQTPHRTSQLTELRRNPMSVAPSRPPNPLQRRSEQVQPNFAYFARHGVRAEPGSSSILRNSARESTVVDSCDTPATMLAAGSETLRSLADHTEGETGVSAPSTTMFDEPGGSSSSGEPVQKLGEQDRKRKGRETEEWEYQSEDVDFESAEAKKNVSGSSTKRSRAAEVHNLSERRRRDRINEKMKALQELIPRSNKFDKASMLDEAIEYLKSLQLQVQRVQLMQMMSMGCGMVPMMFPGIQQYMPTIGMGMGMGMGMGMGMEMGINRPIMPFPNMLSGSALPAAANLGPRFAAMPPFHVPHVPIPDSSRMQATNQAVNNILTSVGTYDSNQSHIPNFTDPYQQYLGPHQMQFQSMQSRAMNQPNVGKPSITRPLENPEIHQSGDK* 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g3413 503 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 280 340 IPR036638 GO:0046983
Tpr6g3413 503 MobiDBLite consensus disorder prediction 47 70 - -
Tpr6g3413 503 MobiDBLite consensus disorder prediction 214 238 - -
Tpr6g3413 503 SMART finulus 288 337 IPR011598 GO:0046983
Tpr6g3413 503 Pfam Helix-loop-helix DNA-binding domain 286 332 IPR011598 GO:0046983
Tpr6g3413 503 Gene3D - 277 343 IPR036638 GO:0046983
Tpr6g3413 503 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 6 501 - -
Tpr6g3413 503 CDD bHLH_AtPIF_like 282 351 - -
Tpr6g3413 503 MobiDBLite consensus disorder prediction 168 187 - -
Tpr6g3413 503 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 282 331 IPR011598 GO:0046983
Tpr6g3413 503 MobiDBLite consensus disorder prediction 239 255 - -
Tpr6g3413 503 MobiDBLite consensus disorder prediction 209 290 - -
Tpr6g3413 503 MobiDBLite consensus disorder prediction 172 187 - -
Tpr6g3413 503 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 6 501 IPR031066 -
Tpr6g3413 503 Coils Coil 288 308 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g3413 Tpr-Chr6 36863281 36868485 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g3413 6 336 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G20180 42.318 3.50e-55 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Tpr6g3413 HLH 2.2e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g3413 - - gmx:100797225 570.466
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr6g3413 6 36863281 36868485 Tpr6g3413 6 36863281 36868485 ECH
Tpr6g3413 6 36863281 36868485 Tpr1g4080 1 46402815 46417819 PCT