Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g3393 ATGGCAACAACTCAAGGTCAAGTTATTACATGCAAAGCTGCGGTGGCCTGGGAACCCAACAAACCCTTAACAATCGAAGATGTCGAAGTCGCTCCTCCTCAAGCCAACGAAGTCCGAATCCAAATCCTCTTCACCGCTCTCTGCCACACCGATGCTTATACCTGGAGCGGCAAAGATCCTGAAGGCCTTTTCCCTTGCATTCTCGGTCACGAAGCTGCAGGGATTGTTGAGAGTGTTGGGGAAGGTGTGACTGATGTTAAGCCAGGGGATCATGTGATTCCGTGTTACCAAGCTGAGTGTGGAGAATGTAAGTTTTGTAAATCGGGAAAGACGAATTTGTGTGGTAAGGTTCGTGCTGCTACTGGTGTTGGAATTATGATGGCCGATCGTAAGCCGAGGTTTTCTATTAAAGGAAAACCTATTTATCATTTCATGGGAACTTCTACTTTTAGTCAGTATACTGTTGTTCATGATGTTAGTGTTGCTAAGATTAATCCAGATGCTCCTTTGGAAAAAGTTTGTCTTCTTGGTTGTGGTGTTCCAACTGGCCTTGGAGCTGTCTGGAACACTGCTAAAGTTGAACCAGGGTCAATTGTTGCTATTTTCGGCCTTGGAACTGTTGGGCTTGCTGTTGCTGAGGGTGCAAAATCTGCCGGTGCATCACGGATTATTGGCATAGATATTGACAACAGCAAATTTGATACTGCAAAAAACTTTGGAGTCACCGAGTTCCTTAATCCAAAAGACCACGAGAAACCAATTCAGCAGGTCATAAGTGATCTAACAGATGGAGGAGTTGATTATAGCTTTGAGTGTATTGGAAATGTTTCTGTGATGAGATCTGCTTTGGAATGCTGCCACAAGGGATGGGGGACATCAGTTATTGTAGGTGTTGCAGCATCAGGGCAGGAAATATCAACTCGCCCTTTCCAGTTGGTGACAGGGCGTGTATGGAAAGGAACAGCTTTTGGTGGCTTTAAGAGCAGGTCACAAGTGCCTTGGCTTGTTGAGAAGTACTTGAAGAAGGAAATCAAGGTTGATGAGTACATTACCCATAATTCGACTCTTGCGGAAATCAACAAGGCTTTTGATCTTATGCATGAAGGGAAGTGCCTCCGTGTTGTGCTTGCATTGCATTGA 1140 0.4491 MATTQGQVITCKAAVAWEPNKPLTIEDVEVAPPQANEVRIQILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTDVKPGDHVIPCYQAECGECKFCKSGKTNLCGKVRAATGVGIMMADRKPRFSIKGKPIYHFMGTSTFSQYTVVHDVSVAKINPDAPLEKVCLLGCGVPTGLGAVWNTAKVEPGSIVAIFGLGTVGLAVAEGAKSAGASRIIGIDIDNSKFDTAKNFGVTEFLNPKDHEKPIQQVISDLTDGGVDYSFECIGNVSVMRSALECCHKGWGTSVIVGVAASGQEISTRPFQLVTGRVWKGTAFGGFKSRSQVPWLVEKYLKKEIKVDEYITHNSTLAEINKAFDLMHEGKCLRVVLALH* 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g3393 379 Gene3D - 14 373 - -
Tpr6g3393 379 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 169 342 IPR036291 -
Tpr6g3393 379 Gene3D - 183 321 - -
Tpr6g3393 379 SUPERFAMILY GroES-like 4 198 IPR011032 -
Tpr6g3393 379 Pfam Zinc-binding dehydrogenase 207 329 IPR013149 -
Tpr6g3393 379 CDD alcohol_DH_class_III 9 376 IPR014183 GO:0006069|GO:0008270|GO:0051903
Tpr6g3393 379 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 69 83 IPR002328 GO:0008270|GO:0016491
Tpr6g3393 379 PANTHER ALCOHOL DEHYDROGENASE 4 377 - -
Tpr6g3393 379 PANTHER S-(HYDROXYMETHYL)GLUTATHIONE DEHYDROGENASE 4 377 - -
Tpr6g3393 379 TIGRFAM adh_III_F_hyde: S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase 11 377 IPR014183 GO:0006069|GO:0008270|GO:0051903
Tpr6g3393 379 SUPERFAMILY GroES-like 327 376 IPR011032 -
Tpr6g3393 379 Pfam Alcohol dehydrogenase GroES-like domain 36 163 IPR013154 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g3393 Tpr-Chr6 36627507 36630479 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g3393 1 332 Monolignol Biosynthesis Gene Families AT1G72680 25.816 1.08e-15 75.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g3393 K00121 - bvg:104899321 723.776
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr6g3393 6 36627507 36630479 Tpr6g3393 6 36627507 36630479 ECH