Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g3390 ATGACCTCTTTCACTTGTTCTGCCTCCGATCTCCATGCACTCCTTGGCAGCGGTGCAAATTCCACAGCCGCTGCCGACTACATTTGCAACGGCTTCAACGCTGTTGCAAACAAATTCATTGACACAACCTATGCCGTTGACAACACTTACCTTCTTTTCTCCGCTTACCTTGTTTTCGCAATGCAACTCGGTTTTGCAATGCTTTGCGCCGGTTCCGTTCGTGCCAAAAACACCATGAACATTATGTTAACAAACGTCCTTGATGCCGCAACCGGCGGCATATTTTTTTATATTTTCGGGTTTGCTTTCGCTTTCGGCACACCTTCCAATGGTTTCATTGGAAAACATTTTTTCGGTCTTAGTGATTTTCCTTCTCAGTCCTTTGATTACGGATATTTTCTGTATCAATGGGCATTCGCAATCGCTGCAGCAGGAATCACGAGCGGATCAATTGCGGAACGAACACAGTTCGTTTCGTATTTGATCTACTCGTCGTTTTTAACCGGTTTTGTTTATCCAATTGTTGCTCATTGGTTTTGGTCTGCTGATGGTTGGGCCAGTCCTGCTAGATCAGAGAATCTTTTGTTTGGTTCCGGCGTTATCGATTTCGCTGGTTGTGGTGTTGTTCATTTGGTTGGTGCTGTTGCTGGTTTTTGGGGTGCTTTTATTGAAGGACCAAGAATTGGTAGATTTGACCATGCAGGTAAACCAGTTTCTTTGAGAGGACATAGTGGTACTTTAGTTGTTATGGGAACATTTTTACTTTGGTTCGGTTGGTACGGTTTTAACCCCGGTTCTTTTATCAACATTTTGAAAACTTATGGTGAAAGTGGTAATAACTACGGTCAATGGAGTGCAATAGGAAGGACCGCCGTGACAACTACATTAGCAGGTTGCACGGCCGCCCTCACAACATTGTTTGGTAAACGCATGCAAACCGGTCATTGGAATGTGACCGATGTTTGTAACGGTTTACTAGGCGGTTTTGCTGCTATAACCGCAGGGTGTTCTGTTGTGGATCCGTGGGCCGCAATTATTTGCGGATTTATCGCTGCTTGGGTTTTAATTGGATGCAACATGTTAGCTGAGAAATTTCACTATGATGATCCTCTTGAAGCTGCACAACTTCATGGTGGTTGTGGAACTTGGGGGATAATTTTCACTGCCTTGTTTGCCAAGAAACAATATGTGAATGAAGTTTATGGTGGTGCCCTTAATAGGCCTTATGGTTTGTTTTTGGGAGGTGGTGGAAAATTATTGGCTGCACATTTGGTTCAAATTGTGGCTATTGTTGCTTGGGTTAGTGTTACTATGGGAACAATGTTTTTTGTTCTTCATAAGTTGAATTTGCTTAGGATTTCTGCTGAGGAAGAAATGGCTGGTTTGGATTTAACTAGTCATGGTGGAATGGCTTATGAGTATCATGATGAGGTTGGAGAACATTCCAAGAAACGTGCAATTGAAGTATGA 1470 0.4306 MTSFTCSASDLHALLGSGANSTAAADYICNGFNAVANKFIDTTYAVDNTYLLFSAYLVFAMQLGFAMLCAGSVRAKNTMNIMLTNVLDAATGGIFFYIFGFAFAFGTPSNGFIGKHFFGLSDFPSQSFDYGYFLYQWAFAIAAAGITSGSIAERTQFVSYLIYSSFLTGFVYPIVAHWFWSADGWASPARSENLLFGSGVIDFAGCGVVHLVGAVAGFWGAFIEGPRIGRFDHAGKPVSLRGHSGTLVVMGTFLLWFGWYGFNPGSFINILKTYGESGNNYGQWSAIGRTAVTTTLAGCTAALTTLFGKRMQTGHWNVTDVCNGLLGGFAAITAGCSVVDPWAAIICGFIAAWVLIGCNMLAEKFHYDDPLEAAQLHGGCGTWGIIFTALFAKKQYVNEVYGGALNRPYGLFLGGGGKLLAAHLVQIVAIVAWVSVTMGTMFFVLHKLNLLRISAEEEMAGLDLTSHGGMAYEYHDEVGEHSKKRAIEV* 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g3390 489 SUPERFAMILY Ammonium transporter 44 453 - -
Tpr6g3390 489 TIGRFAM amt: ammonium transporter 47 472 IPR001905 GO:0008519|GO:0016020|GO:0072488
Tpr6g3390 489 ProSitePatterns Ammonium transporters signature. 202 227 IPR018047 GO:0008519|GO:0016020|GO:0072488
Tpr6g3390 489 PANTHER AMMONIUM TRANSPORTER 2 488 - -
Tpr6g3390 489 Pfam Ammonium Transporter Family 50 472 IPR024041 GO:0008519|GO:0016020|GO:0072488
Tpr6g3390 489 Gene3D Ammonium transporter AmtB like domains 25 488 IPR029020 -
Tpr6g3390 489 PANTHER AMMONIUM TRANSPORTER 2 488 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g3390 Tpr-Chr6 36560378 36561847 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g3390 5 488 Inorganic Solute Cotransporters AT4G13510 73.922 0.0 750
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g3390 K03320 - twl:120007420 809.29