Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g3347 ATGGCACCCAATCCAAAAGTTGTAGCGGCATTCCGCGCAATGGCGGTCCTTGGGATTGAGGAATGCAAAGTGAAACCGGTATTGAAGAAACTACTTAGATTGTATGATAAAAAGTGGGAACTTATTGAAGCAGAGAATTTTAGGGCTCTTGCTGATGCAATTTTTGATGCGGCTGAAAACCAGGAGTTAGAACCAGAGCCTGAGCCGGGAAAGAAAAACAAAAAGGCCGTGGAGGTAGATGATGAAGCTCCTGCTCACGAAGAGCCAGTGCGACCTTTGAAGAGGTTGCGTTTAAGAGGTCAAGATGGTCAATCATCACGCCTGCTGTCTAACGGTGGTCCAAGTTCAGCCGCCTTTCCATTGAAATCACCTAAACCGGAACCTGGCACAGTACCTGTAAGTAGTTCCAGGCTGCAGCCTCAAAGCACATCAGTGTTATCCAATGGAAATGCCGCCGTTGACAAGGGAAAGAAGCCTGTATCACCTGAAGATACTCTAAGAAGGAGAAGATCTATATCTGAAAGAAATCCACCTCCAGCGGTGTTTAAAGAACCAGCTGTTGAATCAGGAACCTCTCCGTTGTCAAAAAACAAAACTCGTCATCCTTACCCTTTTGTCATCCCCAAGCCCGAGCCTTTTGATGAAGGTCCAGATTATGTAGTTCCCATTTCAATGATTCTTCCTGAACCATCAAGTGTTAGAGAGTCTTCGTCGAAGAATGATACAGTTGGAGAGCAAGATGGCAACAACACCGTGGCATCACAATACAGAAATGAAAATGTTGAAGGTGAAGATGTTCTTCCTTCCTCAAATGAAGAAGCGAATTCTAATGCTGAGCTAGCCTCATCATCTATGGTTGAGGACCGATCTGTAAAGGTACTACCAACTGTTAGACTTTCAAAAGAACCAGAGGCAAATGGCACACTGATTGACGGAGGAAATAAAGATTCCGCAATACTTTCTTGCGCTGCAAATGGATCAACCCCTGTTAAGTCTTCTGCTGCCTTGGTTGCACCCCAAGTTCACGTTTCTCCACCCTGCCCAAGTGGTCCGGATGATGCTATACTAGTTTCCAAGAAGGATGTTATGAACAATTTCTCGGAAAGTGACGGTGTGAAGGAGCCAGGGGAACCTATGCCTCAAAATTCATGTAATGTAATGAATGCTCCAAAGCATCATCATACAACTGATGATACAAGGCCTGTTTGTGCTACCAATGACCTAACAAAGGGAGAAGAAAAAGTGAAAATTTCATGGGTGAATAATTCTAACAATGATATTCCACCTCCGTTTCACTACATACCCCGAAACTTGGTGTTCCGAGATGCATATGTTAATATTTCTTTATCTCGTATTGGGAGTGAAGATTGTTGTGCTACCTGTATGGGCAATTGTGTCTTATCATCTAAACCATGTTCTTGTGCAAAGAAAACTGGAGGGGATTTTGCCTACACCGCACAAGGTGTACTAAAGGAAAAGTTCCTGGAAGAGTGTATTGCCATCAGCCGTGATCCTCAAAATTATTCCTATTGCAAAGAATGCCCACTTGAAATGTCAAAGAATGATGGCTGTTTAGAACCATGTAAAGGACACTTGAAGAGGCAATTTATTAAAGAGTGCTGGAGCAAATGTGGCTGCGGGAAACATTGTGGCAATCGGATTGTCCAGCGTGGAATATCTCGCAACTTGCAGGTGTTTTTAACTTCAGATGGAAAAGGATGGGGTCTTCGTACCTTAGAGGATCTTCCAAAAGGTGCATTTGTATGCGAGTTTGTTGGAGAAATTTTGACCGTCGAAGAATTGCATGAGAGGAACTTGAAATATCCCAAAAGTGGGAAATATACGTACCCAATTTTATTGGATGCAGAATGGAACTCAGGAGTTGTAAAGGATAACCAAGCTCTTTGCTTATATGCAGCATCATATGGAAATGCTGCGAGGTTTATTAATCACAGATGTTTGGATGCAAACTTGATTGAGATCCCGGTTGAAGTTGAGGGTCCATCTCATCACTATTATCATTTTGCTTTCTTCACCTCCAGAAAAATCGCAGCACACGAAGAGTTGACCTGGGACTATGGCATCGACTTTGATGACGATGATCAGCCTGTCGAGCTGTTCCGGTGCAAATGTGGCAGTAAATTTTGCAGGAATATGAAGCGATCAAATAGAACCATTAGATCCTGA 2187 0.4321 MAPNPKVVAAFRAMAVLGIEECKVKPVLKKLLRLYDKKWELIEAENFRALADAIFDAAENQELEPEPEPGKKNKKAVEVDDEAPAHEEPVRPLKRLRLRGQDGQSSRLLSNGGPSSAAFPLKSPKPEPGTVPVSSSRLQPQSTSVLSNGNAAVDKGKKPVSPEDTLRRRRSISERNPPPAVFKEPAVESGTSPLSKNKTRHPYPFVIPKPEPFDEGPDYVVPISMILPEPSSVRESSSKNDTVGEQDGNNTVASQYRNENVEGEDVLPSSNEEANSNAELASSSMVEDRSVKVLPTVRLSKEPEANGTLIDGGNKDSAILSCAANGSTPVKSSAALVAPQVHVSPPCPSGPDDAILVSKKDVMNNFSESDGVKEPGEPMPQNSCNVMNAPKHHHTTDDTRPVCATNDLTKGEEKVKISWVNNSNNDIPPPFHYIPRNLVFRDAYVNISLSRIGSEDCCATCMGNCVLSSKPCSCAKKTGGDFAYTAQGVLKEKFLEECIAISRDPQNYSYCKECPLEMSKNDGCLEPCKGHLKRQFIKECWSKCGCGKHCGNRIVQRGISRNLQVFLTSDGKGWGLRTLEDLPKGAFVCEFVGEILTVEELHERNLKYPKSGKYTYPILLDAEWNSGVVKDNQALCLYAASYGNAARFINHRCLDANLIEIPVEVEGPSHHYYHFAFFTSRKIAAHEELTWDYGIDFDDDDQPVELFRCKCGSKFCRNMKRSNRTIRS* 729
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g3347 728 ProSiteProfiles SET domain profile. 561 694 IPR001214 GO:0005515
Tpr6g3347 728 Pfam SET domain 573 694 IPR001214 GO:0005515
Tpr6g3347 728 ProSiteProfiles Pre-SET domain profile. 457 558 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Tpr6g3347 728 MobiDBLite consensus disorder prediction 61 203 - -
Tpr6g3347 728 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 1 728 IPR025776 -
Tpr6g3347 728 PANTHER INACTIVE HISTONE-LYSINE N-METHYLTRANSFERASE SUVR1-RELATED 1 728 - -
Tpr6g3347 728 MobiDBLite consensus disorder prediction 64 101 - -
Tpr6g3347 728 SMART preset_2 405 545 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Tpr6g3347 728 MobiDBLite consensus disorder prediction 103 117 - -
Tpr6g3347 728 MobiDBLite consensus disorder prediction 269 284 - -
Tpr6g3347 728 CDD SET_SETDB-like 429 694 - -
Tpr6g3347 728 Gene3D - 1 60 IPR043017 -
Tpr6g3347 728 MobiDBLite consensus disorder prediction 129 150 - -
Tpr6g3347 728 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SUVR2-LIKE PROTEIN 1 728 - -
Tpr6g3347 728 Gene3D SET domain 408 719 IPR046341 -
Tpr6g3347 728 MobiDBLite consensus disorder prediction 157 174 - -
Tpr6g3347 728 Pfam Pre-SET motif 409 553 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Tpr6g3347 728 MobiDBLite consensus disorder prediction 230 288 - -
Tpr6g3347 728 SUPERFAMILY SET domain 415 717 IPR046341 -
Tpr6g3347 728 MobiDBLite consensus disorder prediction 230 258 - -
Tpr6g3347 728 Pfam Ubiquitin-binding WIYLD domain 6 59 IPR018848 GO:0018024
Tpr6g3347 728 SMART set_7 561 700 IPR001214 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g3347 Tpr-Chr6 36132872 36139991 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g3347 372 717 Su(var)3-9 homologs AT1G73100 29.201 6.96e-32 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Tpr6g3347 Pre-SET 6.8e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g3347 - - cam:101500192 1103.97
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr6g3347 6 36132872 36139991 Tpr6g3347 6 36132872 36139991 ECH
Tpr1g4016 1 45231543 45238842 Tpr6g3347 6 36132872 36139991 PCT