Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g3342 ATGGAAGCTCGTCCTGCTTTTTCAATTGAAAGATCAAGTTCCAATCAGCTGAATAACATAGGGATGTCTGGAGCACTTCCTTCATCGTTGTCTGTGCATCCAACACCTCTAGAAGAGACTTACCCCAGATTTTCTGATTCACAGCCGGCTTTTGTAGAAAAAGGTCTTAAGACAAGAACTTTTAATCATTCAAGTCATATAAGTTCCAGTGGAGCAGTTGGGCATATGTTTTCATCTTCCCCTGGATATTCAACAGACCTTCATCACTCATCCCTTTCACCTCATGAAAAACACTCTAGAAATGCTCATTTTATTTCACAGTCAATGAGCAACATGGCTTCGGTGCCATTACCGTATTCTTCAAATAATGGTCCACTACCTTCTACAACATCAACACATTATTCCAATGGAAGCAGTGCTTCATGGCATGCAGATTCCTTGCCTAGCTTTCTTGATTTCTCTGTGAATGCCTCAATTGATAATAGCCAAGTAGAGAGCAGTGCCTGCAATATTATGGCTACTGAGGAGTTTCCTAAGCGAAATGATTGGCAGGAGTGGGCTGACCAGCTAATCAGTGACGACGATACTTTGACTTCTAATTGGAATGATCTTCTTGCTGATAATATTCAAGATCTTGAGCCAAAGGCGGCGGATCCCATTTCGAAGTCATCTTCACAATTTTCGGCAGGACACCAATCACAAGGCCACCAACAACTTCCAGCTCTATCTGGAGAAAACAATGTTGGTGTCGCTCCATCTTCCTCAGCAAATTCTGCACCTGCCAAGCCACGGATGCGTTGGACTCCTGAGCTTCACGAGGCATTTGTGGAGGCTGTCACCCAACTTGGTGGGAGTGAAAGAGCTACCCCTAAGGGTGTGTTGAAGCTCATGAAAGTTGAAGGATTAACTATATATCATGTTAAAAGCCACTTACAGAAATACAGGACAGCTAGATATAGACCAGAGTCTTCTGAAGGAGCTGCGGAGAAAAAACTAAGCCCCATTGAAGATATTTCATCTCTAGATTTGAAAACTGGTATTGAGATCACGGAAGCTCTGCGATTGCAGATGGAGGTCCAGAAACGGTTGCATGAACAGCTTGAGATTCAAAGAAATCTACAGCTGCGAATAGAAGAGCAAGGCAGGTACCTCCAGATGATGTTTGAGAAGCAATGCAAATCTGGTGTTGAACCATTTAAGGCATCTTCATCAGCCATTGGGGATCCATCTGGTGTGTCTTCTGACACCATGAAAGATTCTCTTGCCAAAAATGAATCAGAAGCATCCAAAACAGACCATTGCAGGTCAGGACCTGATCAAGCTAATGGTAGTACCACAGTTGAGGAAAGCTCACTGCAGGATACCTCCAAAGTCCAAGCTTCTGATGATCTTAAGCAAAATGATAACGAAGATAGCGCTCAACCCCCTAAGCGTCCAAGAACAGATGAGTAA 1452 0.4346 MEARPAFSIERSSSNQLNNIGMSGALPSSLSVHPTPLEETYPRFSDSQPAFVEKGLKTRTFNHSSHISSSGAVGHMFSSSPGYSTDLHHSSLSPHEKHSRNAHFISQSMSNMASVPLPYSSNNGPLPSTTSTHYSNGSSASWHADSLPSFLDFSVNASIDNSQVESSACNIMATEEFPKRNDWQEWADQLISDDDTLTSNWNDLLADNIQDLEPKAADPISKSSSQFSAGHQSQGHQQLPALSGENNVGVAPSSSANSAPAKPRMRWTPELHEAFVEAVTQLGGSERATPKGVLKLMKVEGLTIYHVKSHLQKYRTARYRPESSEGAAEKKLSPIEDISSLDLKTGIEITEALRLQMEVQKRLHEQLEIQRNLQLRIEEQGRYLQMMFEKQCKSGVEPFKASSSAIGDPSGVSSDTMKDSLAKNESEASKTDHCRSGPDQANGSTTVEESSLQDTSKVQASDDLKQNDNEDSAQPPKRPRTDE* 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g3342 483 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 262 316 IPR006447 GO:0003677
Tpr6g3342 483 MobiDBLite consensus disorder prediction 217 238 - -
Tpr6g3342 483 Pfam Myb-like DNA-binding domain 264 315 IPR001005 -
Tpr6g3342 483 Pfam MYB-CC type transfactor, LHEQLE motif 347 394 IPR025756 -
Tpr6g3342 483 Coils Coil 350 370 - -
Tpr6g3342 483 MobiDBLite consensus disorder prediction 219 238 - -
Tpr6g3342 483 Gene3D - 261 320 - -
Tpr6g3342 483 PANTHER PROTEIN PHR1-LIKE 1-LIKE ISOFORM X1 61 483 - -
Tpr6g3342 483 MobiDBLite consensus disorder prediction 435 460 - -
Tpr6g3342 483 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 61 483 IPR044848 GO:0003700
Tpr6g3342 483 SUPERFAMILY Homeodomain-like 260 316 IPR009057 -
Tpr6g3342 483 MobiDBLite consensus disorder prediction 461 483 - -
Tpr6g3342 483 MobiDBLite consensus disorder prediction 400 483 - -
Tpr6g3342 483 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 259 319 IPR017930 -
Tpr6g3342 483 MobiDBLite consensus disorder prediction 420 434 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g3342 Tpr-Chr6 36060877 36072489 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g3342 1 440 G2-like Transcription Factor Family AT4G28610 48.107 2.89e-110 331
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Tpr6g3342 Myb_DNA-binding 4e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g3342 - - gmx:100810560 743.421
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr6g3342 6 36060877 36072489 Tpr1g1577 1 14667294 14671675 PCT