Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g3341 ATGATCTTCTTGCTGATAATATTCAAGATTGAGCCAAAGGCGGCGGATCCCATTTCGACGTCATCTTCACAATTTTCGGCAGGACACCAATCGCAAGGCCACCAACAACTTCCAGCTCTATCTGGAGAAAACCATGTTGGTGTCGCTCCATCTTCCTCAGCAAATTCTGCACCTGCCAAGCCACGGATGCGTTGGACTCCTGAGCTTCACGAGGCATTTGTGGAGTCTGTTACCCAACTTGGCGGGAGTGAAAGAGCTACCCCTAAGGGTGTGCTGAAGCTCATGAAAGTTGAAGGATTAACTATATATCACGTTAAAAGCCACTTACATAGTTACATGTACCATTTGATTTATCTTCCAAGAAATACAGGACAGCTGGATATAGACCAGAGTCTTCTGAAGTTAGGACTTTGGATTAGGATACCATTGGCTATTAAGTTATTGAAGTATGAATTATGA 459 0.4379 MIFLLIIFKIEPKAADPISTSSSQFSAGHQSQGHQQLPALSGENHVGVAPSSSANSAPAKPRMRWTPELHEAFVESVTQLGGSERATPKGVLKLMKVEGLTIYHVKSHLHSYMYHLIYLPRNTGQLDIDQSLLKLGLWIRIPLAIKLLKYEL* 153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g3341 152 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 57 117 IPR017930 -
Tpr6g3341 152 Pfam Myb-like DNA-binding domain 62 112 IPR001005 -
Tpr6g3341 152 SUPERFAMILY Homeodomain-like 58 115 IPR009057 -
Tpr6g3341 152 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 17 112 IPR044848 GO:0003700
Tpr6g3341 152 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL4-RELATED 17 112 - -
Tpr6g3341 152 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 60 113 IPR006447 GO:0003677
Tpr6g3341 152 Gene3D - 59 116 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g3341 Tpr-Chr6 36053826 36055005 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g3341 51 112 G2-like Transcription Factor Family AT4G28610 79.032 4.28e-29 108
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Tpr6g3341 Myb_DNA-binding 1.6e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g3341 - - gmx:100810560 153.68
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr6g3341 6 36053826 36055005 Tpr6g3341 6 36053826 36055005 ECH