Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g3339 ATGGCAAATATTCAAAAGTCTATTGCTTCTGTCTTTTATATACTCCTACTACTTATATCTTTGCTTCCATTGAAAATCACTTCATCACTAAAAACAGAAGCAGAAGCTCTTGTCAAATGGAAAAACAATCTATCCCCTCCTCTTCCTTTTCCTTCTCCTCTCAATTCATGGTCACTCACCAACCATATCAACCTTTGCAATTGGGATGCTGTTGTTTGTGACAACACTAATGCAACTGTCTTAGAGATAAACTTGTCTAATGCCAATCTCAGTGGAACACTCACTGGCTTAGATTTTGCTTCTCTCCCAAACCTCACTCTCCTCAACCTCAATAACAACAGGTTTCATGGATCAATAACATCAACAATTGGCAACCTCTCGACGCTCACTTTCTTGGACTTGGGAAACAACTTATTTGAAGGCACACTCCCTTCCGACCTAGCCCAACTTAAGGAACTTCAACATGTTAGTTTTTACAACAACAATTTCAATGGTACGATTCCTTATCAGCTCACTAATCTCCCCAAGGTAAGTTACCTTGAACTTGGAGCAAACTTTTTTGTATCTTCCCTTGACTGGTCCCAATATTCAAACATGCCTTCCTTAAATTACCTTGGTTTGGAAGTAAATAAATTCACTGGTGACATTCCGAGTTTCATAGTTGAGTGCAAGAACTTAACATACCTTGACCTCTCTCAGAACAACTGGAATAGTAAAATACCTGAATCCATTTATGGTAATTTGAAAAGGCTAGAATATCTTAACCTCACCAACTGTGGACTAGAAGGAAAACTATCTTCCAACTTGTCTATGCTCTCAAATCTTAAAGATCTTCGTCTCGGTAATAACATGTTTAATGGTTCTATTCCAACAGAGATAAGATTGCTATCTAGGCTTCAATTCCTTGAACTGAACAACGTTTCAGCCCGTGGGGAAATTCCTTCTTCCATAGGTCAACTAAAGGAGCTAGTGCATCTTGATCTAAGTGCTAACTTTTTTAACTTTAGTGTCCCTTATGAGATTGGCCTATGCACAAATCTAACTTTCCTGAGCTTAGCTGGAAATAATCTAACAGGTTCTTTGCCTTTGTCATTAGCTAATTTGACCAAACTTTCAGAACTAGGATTATCAGAAAATTCATTCTCTGGTCAAATTTCAGCTTCATTGATCTCTAGTTGGACTGAGTTAACTTCTTTGCAAGTCCAAAACAATAAATTAACAGGAACTGTTCCTCCACAGATTGGCCTGTTGAAAAAAATGATACGCCTTTTTCTCTACAAAAATATTTTCTCAGGTCCTATTCCTCGAGAGATTGGAAACTTAAAGGCAATGACACAGTTAGACCTTTCAGCAAACCATTTTTCTGGTCCAATTCCAACAACCATTTGGAACCTCACAAACATAACAGTCATAAATCTTTTCTTCAACAACCTCTCTGGAAACATTCCAGCGGATATTGGAAACTTAACCTTATTGCAAATCTTTGATATCGACAATAATAACTTTGATGGAGAATTGCCACATACAATTTCTCATCTAACTTCCTTAATTCATTTTTCTGTGTTCACCAATAATTTTTCGGGTAGCATTCCTGGAGACTTTGGAAAGAACAGTCCTTCTTTAACTAATGTCTACCTTTCAAACAATAGTTTCTCAGGAGAACTTCCTTCTGACATGTGCAGTGGCCTCAATCTAGTTGTTTTGGCAGTAAATAACAATAGCTTTTCAGGGCCATTGCCAAACTCCTTGAGAAATTGTTCATCCTTAACAAGAGTTAGGCTTGATGATAACCAGTTCAGTGGAAACATGACAGAAGCATTTGGAGTTCATCCAAATCTTAATTTCATCTCACTTAGCAAAAATCGTCTCGATGGCCATCTCTCTTCGGATTGGGGTAAATGTATAAACTTAACTGAGATGGAAATGAGTGGAAACAAACTTTCAGGGAAAATTCCATCAGAGCTGAGTAAGCTGAGCAAATTAGAATTTCTTAGCCTGCACTCCAACGAATTCACCGGAAATATCCCACCAGAAATTGGAAATCTAAGCCTCCTCTACAAGTTGAACTTGAGCAGGAACCATTTTTCAGGAGAGATCCCAAAGAATATTGGAAGATTATCTAAGCTTAACTTTGTTGATTTATCTGATAACAACTTCAATGGAAGCATTCCAAAAGAGATCGGTAATTGTGATCAGTTGGTAAGTCTTAACTTAAGCCATAACAATCTATCTGGCACGGTGCCTTATGAGCTAGGCAATCTGTTCTACCTCCAATCCATGTTAGATCTCAGCAGCAACAATCTTTTGGGAGAAATTCCTCAAAATCTTCAAAAGTTAGCATCATTGGAGATCCTCAATGTCTCACACAACAATCTATCTGGAACAATCCCACAATCCTTTTCAAGTATGGGCAGCCTTCAATCTGTGGATTTTTCTTACAACCACTTATCAGGTTTGATCCCAACAGGCGGTGTTTTTCAAAAAGAAACTGCTGAAGCTTTTGCTGGGAATTCAGGTTTGTGTGGTGAGGTAAAAGGATTAACATGTGCCACAACATTGTCTAAAGAAAATTCTGGAGGGACCAACAAAAAGGTACTTATTGGTGTTACTACATCAGTTGGTGGAGTACTATTTATAGGGATGATTGGTTTTGGAATCCTACTATTTCAAAGAAAAGCCAAAAAACTTAGTGAAGAGTCCAAAAGCAATGAAGATAATGATCAATCTACTAGCATGGTATGGGGAAAAGATGCAAAATTCACATTTTCTGATCTGGTGAAAGCAACCAACGACTTCAATGAAAAGTACTGTATTGGAAAAGGAGGATTTGGAAGTGTTTATAAGGCAGAACTAGTTACAGGTCAAGTTGTTGCTGTGAAAAGATTCAATATGTCTGACTCTGATGACATTCCAAATGTGAATCATATGAGCTTCATGAATGAGATAAGAGCACTAACAGGAGTAAGACACCGGAATATAATAAAGCTCTTTGGTTTCTGTTCTACGAGGAGACAAATGTTCCTGGTTTATGAACATGTAGAAAGAGGAAGTTTGGGAAAATTGTTGTATGGAGGAGAAGGAAAATTGGAGATAAATTGGGGTACAAGGGTAGAAATTGTGCAAGGAATAGCACATGCAATTTCTCACCTTCATAGTGATTGCTCTCCACCAATTGTGCACAGAGATATAACATTGAATAATATACTACTGGATTCAAATTTAGTACCTCATCTTGCAGATTTCGGCACAGCAAAGCTTCTAAGCTCAAACAATTCAACCTGGTCCTCCGTTGCTGGATCTTACGGCTACATGGCTCCAGAACTAGCACAAACTATGAGGGTGACTGAAAAGTGTGATGTGTATAGTTTTGGTGTGGTAGTGTTAGAGATATTGATGGGAAAACACCCTGGAGAATTCTTAGGTACCTTGTATTCAAACAAGTCTTTGACATTAATGGAAGTGCTTGTGAAGGATGTTGTAGACCAAAGGCTTCCACCTCCAACAGACAAATTAGGTGAAACAATAGTGTTCACAATGAGAGTAGCTTTGGCTTGTACGCGAGCTGCTCCTGAGTCTAGACCCACGATGCGATCTGTTGCACAAGAATTGTCAGCACCTACACAGGATTGTCTTTCTCTTCCATTTGGTATGATAACTGTAAGCAAGCTTACAGGATTCAAGAAATAG 3687 0.383 MANIQKSIASVFYILLLLISLLPLKITSSLKTEAEALVKWKNNLSPPLPFPSPLNSWSLTNHINLCNWDAVVCDNTNATVLEINLSNANLSGTLTGLDFASLPNLTLLNLNNNRFHGSITSTIGNLSTLTFLDLGNNLFEGTLPSDLAQLKELQHVSFYNNNFNGTIPYQLTNLPKVSYLELGANFFVSSLDWSQYSNMPSLNYLGLEVNKFTGDIPSFIVECKNLTYLDLSQNNWNSKIPESIYGNLKRLEYLNLTNCGLEGKLSSNLSMLSNLKDLRLGNNMFNGSIPTEIRLLSRLQFLELNNVSARGEIPSSIGQLKELVHLDLSANFFNFSVPYEIGLCTNLTFLSLAGNNLTGSLPLSLANLTKLSELGLSENSFSGQISASLISSWTELTSLQVQNNKLTGTVPPQIGLLKKMIRLFLYKNIFSGPIPREIGNLKAMTQLDLSANHFSGPIPTTIWNLTNITVINLFFNNLSGNIPADIGNLTLLQIFDIDNNNFDGELPHTISHLTSLIHFSVFTNNFSGSIPGDFGKNSPSLTNVYLSNNSFSGELPSDMCSGLNLVVLAVNNNSFSGPLPNSLRNCSSLTRVRLDDNQFSGNMTEAFGVHPNLNFISLSKNRLDGHLSSDWGKCINLTEMEMSGNKLSGKIPSELSKLSKLEFLSLHSNEFTGNIPPEIGNLSLLYKLNLSRNHFSGEIPKNIGRLSKLNFVDLSDNNFNGSIPKEIGNCDQLVSLNLSHNNLSGTVPYELGNLFYLQSMLDLSSNNLLGEIPQNLQKLASLEILNVSHNNLSGTIPQSFSSMGSLQSVDFSYNHLSGLIPTGGVFQKETAEAFAGNSGLCGEVKGLTCATTLSKENSGGTNKKVLIGVTTSVGGVLFIGMIGFGILLFQRKAKKLSEESKSNEDNDQSTSMVWGKDAKFTFSDLVKATNDFNEKYCIGKGGFGSVYKAELVTGQVVAVKRFNMSDSDDIPNVNHMSFMNEIRALTGVRHRNIIKLFGFCSTRRQMFLVYEHVERGSLGKLLYGGEGKLEINWGTRVEIVQGIAHAISHLHSDCSPPIVHRDITLNNILLDSNLVPHLADFGTAKLLSSNNSTWSSVAGSYGYMAPELAQTMRVTEKCDVYSFGVVVLEILMGKHPGEFLGTLYSNKSLTLMEVLVKDVVDQRLPPPTDKLGETIVFTMRVALACTRAAPESRPTMRSVAQELSAPTQDCLSLPFGMITVSKLTGFKK* 1229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g3339 1228 PRINTS Leucine-rich repeat signature 733 746 - -
Tpr6g3339 1228 PRINTS Leucine-rich repeat signature 779 792 - -
Tpr6g3339 1228 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 10 127 - -
Tpr6g3339 1228 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 261 1222 - -
Tpr6g3339 1228 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 128 331 - -
Tpr6g3339 1228 ProSiteProfiles Protein kinase domain profile. 932 1211 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr6g3339 1228 SMART LRR_typ_2 441 465 IPR003591 -
Tpr6g3339 1228 SMART LRR_typ_2 320 344 IPR003591 -
Tpr6g3339 1228 SMART LRR_typ_2 272 296 IPR003591 -
Tpr6g3339 1228 SMART LRR_typ_2 779 802 IPR003591 -
Tpr6g3339 1228 SMART LRR_typ_2 489 513 IPR003591 -
Tpr6g3339 1228 SMART LRR_typ_2 706 730 IPR003591 -
Tpr6g3339 1228 SMART LRR_typ_2 368 392 IPR003591 -
Tpr6g3339 1228 SMART LRR_typ_2 658 682 IPR003591 -
Tpr6g3339 1228 SMART LRR_typ_2 126 150 IPR003591 -
Tpr6g3339 1228 SMART LRR_typ_2 102 125 IPR003591 -
Tpr6g3339 1228 SMART LRR_typ_2 803 828 IPR003591 -
Tpr6g3339 1228 SUPERFAMILY Protein kinase-like (PK-like) 908 1203 IPR011009 -
Tpr6g3339 1228 SUPERFAMILY RNI-like 313 648 - -
Tpr6g3339 1228 Gene3D Phosphorylase Kinase; domain 1 891 1012 - -
Tpr6g3339 1228 Pfam Protein kinase domain 934 1201 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr6g3339 1228 Pfam Leucine rich repeat 760 816 IPR001611 GO:0005515
Tpr6g3339 1228 Pfam Leucine rich repeat 200 261 IPR001611 GO:0005515
Tpr6g3339 1228 ProSitePatterns Protein kinases ATP-binding region signature. 938 960 IPR017441 GO:0005524
Tpr6g3339 1228 Gene3D Ribonuclease Inhibitor 485 850 IPR032675 -
Tpr6g3339 1228 Gene3D Ribonuclease Inhibitor 390 484 IPR032675 -
Tpr6g3339 1228 SUPERFAMILY RNI-like 82 430 - -
Tpr6g3339 1228 Pfam Leucine rich repeat N-terminal domain 31 74 IPR013210 -
Tpr6g3339 1228 Gene3D Ribonuclease Inhibitor 30 192 IPR032675 -
Tpr6g3339 1228 Gene3D Ribonuclease Inhibitor 291 389 IPR032675 -
Tpr6g3339 1228 Gene3D Ribonuclease Inhibitor 193 290 IPR032675 -
Tpr6g3339 1228 PANTHER MDIS1-INTERACTING RECEPTOR LIKE KINASE 2-LIKE 128 331 - -
Tpr6g3339 1228 PANTHER MDIS1-INTERACTING RECEPTOR LIKE KINASE 2-LIKE 261 1222 - -
Tpr6g3339 1228 PANTHER MDIS1-INTERACTING RECEPTOR LIKE KINASE 2-LIKE 10 127 - -
Tpr6g3339 1228 SUPERFAMILY L domain-like 607 842 - -
Tpr6g3339 1228 Gene3D Transferase(Phosphotransferase) domain 1 1013 1211 - -
Tpr6g3339 1228 ProSitePatterns Tyrosine protein kinases specific active-site signature. 1058 1070 IPR008266 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g3339 Tpr-Chr6 36024417 36029527 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g3339 15 676 Receptor kinase-like Gene Family AT4G08850 32.132 5.63e-80 283
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Tpr6g3339 Pkinase 3e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g3339 - - gmx:100809137 1739.93
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr6g3339 6 36024417 36029527 Tpr6g3339 6 36024417 36029527 ECH