Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g3335 ATGGAAGATTCTGGAAAATCCAATCTCAACAGTAGTAGTAAATTATTGAATTCATGGATGCTTAACTTTCAGAAACTCGCTCTCGAACTCAAGTGCTCTCTCTGCTTGAACTTGTTCAAACAACCAGTTTTGCTTCCATGTAATCACTTGTTCTGCAGTTCCTGCTTGGTGGATGGTACTGAGATTGGTACTTGTTCTAAGTGTGCTCTCTGTAAGACTAAGTACGCTGAAACAGATGTAAGGCATTTGTCTTTTCTGGAAAACATGGTAGCAATTTATAAGAATATGGATGCGACATTTTGTGCTAATGCGTTTCAGCAACGATCTTCTGATAACACGAGGGTTTTGGAGCAGTGCCAAACTCTTCGCAATTCAACTGGTAGTAATAAAAAGGCTGATAAGGTTCTGCACAATTCACACATTTCAAATGGAGTTGGGGTTGGCCAGAATCACAAATCTGGAATTACAATGAATGGTAAAGCCGGGGAGCTTGAAATGTCTCGCAGAGGAGGGGGTAACAACCACATTGCAGTGAAGCCTAATTCAATGAGATGTTCCCAGACAGAAATTGGGGGTCATATGGAAATGGATTTGAATCAAGTGACACAATCAGCACCAGATAGCCCTCCATTTTGTGACACCAAAGGTTCTGATAATGGTTGCAGCGATCAAAACAGTGAGAAGCCTCTCAATCTTGAGAGATCTGAAAATTCGTCATTGACAAGAGCAAACACAGGAAAAGGTAATATGAAAGAAAGAATGGCTCAATTCAGGTCTGAAAGTTCTGCCTCTGAAAATGAGGATCTTACGAGAGATCTTAAGAGACAAAAGAATCTTACTAATGGAGATGGTATTATTCAACAACGCACCTCATTTCATAATAAGCTTGTGGATTCTCCCTGTGACTCGGGCACTAATTTTGAAAAGGACCCCGGTGCACTCATCCCTTCAAATGCACCAAATGACTTGTGCCCAAATACTAGCATCTTCTGCTTGTTTTGCCAGTCCTTTAGAATTTCAGAGGCTACTGGGCCAATGCTGCATTATGCAAATGGGATTTCAGTTGCAGGAGATGCTGCAATGCAACCAGATGTCCTGCATGTGCATAAAGCTTGTATCGACTGGGCACCACAAGTGTATTTTGTTGGCGATACTGTTAAGAATTTGAAGGCAGAAGTGGCCAGGGGAGCAAAGCTTAAATGCACAAAATGCGGTCTAAAGGGAGCTGCTCTTGGTTGCTATGTCAAATCATGTAGAAGAACTTATCATGTCCCTTGTGCAATGGACATCTCTACTTGCCGCTGGGATCATGTGGATTATCTCTTGCTATGTCCTGTTCATTCAAATGTCAAATTTCCAAATGAGAAATCCAGTCATGATAAACAGGCAATTCAGAACCATCCTGTTTCATCTCATCTGCCATTTCAACAGTCAAATCAACAGTTGGGAGCTTCAGAGGATTATGGTAAAAAAATGGTTTTCTGTGGATCTGCTCTATCGAATGAAGAAAAGTTGCTAATGATTAATTTTGCAAGAAAGGTTGGTGCTACAGTGACCAAGTGTTGGACCTCAAATGTCACCCACGTGATCGCGGCGACTGATGCAAATGGAGCATGCTCCAGGACATTGAAAGTTTTGAGGGCGATTCTAAATGGACAATGGATCCTAAAAATGGACTGGATAAGAGCATGTATGGAAGCGATGAATCTCGTAGAAGAAGAACTGTATGAAGTTGATCTTGACAACCAAGGGTGTCAGGGTGGCCCAAAAGCTGGCAGACTTAGGGCATTGGCCAATGAGCCAAAGCTATTCAATGGCTTAAAGTTTTATTTTTCTGGTGATTATGATCTGAGTTATAAGAAATATCTTGAAGATTTAGTTGAAGGAGGAGGAGGTGCTGTTTTGAAAAGCAAGGATGAATTGGAAGTAGGAAGAGATGCAAACTTGCTAGCTGTTTACAATCTTGATCCCCCACAAGGATGTAAGCTGGGGGAGGAAGTTTCAATTCTTTGGCAGAGACTGAATGAAGCAGAGGATTTAACTGCCAATACTGTTGGTCACACATGGATTCTGGAGTCAATTGCTGCATGTAAGTTGCAGCCTTTTAGTTAG 2112 0.4162 MEDSGKSNLNSSSKLLNSWMLNFQKLALELKCSLCLNLFKQPVLLPCNHLFCSSCLVDGTEIGTCSKCALCKTKYAETDVRHLSFLENMVAIYKNMDATFCANAFQQRSSDNTRVLEQCQTLRNSTGSNKKADKVLHNSHISNGVGVGQNHKSGITMNGKAGELEMSRRGGGNNHIAVKPNSMRCSQTEIGGHMEMDLNQVTQSAPDSPPFCDTKGSDNGCSDQNSEKPLNLERSENSSLTRANTGKGNMKERMAQFRSESSASENEDLTRDLKRQKNLTNGDGIIQQRTSFHNKLVDSPCDSGTNFEKDPGALIPSNAPNDLCPNTSIFCLFCQSFRISEATGPMLHYANGISVAGDAAMQPDVLHVHKACIDWAPQVYFVGDTVKNLKAEVARGAKLKCTKCGLKGAALGCYVKSCRRTYHVPCAMDISTCRWDHVDYLLLCPVHSNVKFPNEKSSHDKQAIQNHPVSSHLPFQQSNQQLGASEDYGKKMVFCGSALSNEEKLLMINFARKVGATVTKCWTSNVTHVIAATDANGACSRTLKVLRAILNGQWILKMDWIRACMEAMNLVEEELYEVDLDNQGCQGGPKAGRLRALANEPKLFNGLKFYFSGDYDLSYKKYLEDLVEGGGGAVLKSKDELEVGRDANLLAVYNLDPPQGCKLGEEVSILWQRLNEAEDLTANTVGHTWILESIAACKLQPFS* 704
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g3335 703 ProSiteProfiles Extended PHD (ePHD) domain profile. 328 448 IPR034732 -
Tpr6g3335 703 MobiDBLite consensus disorder prediction 217 270 - -
Tpr6g3335 703 Pfam BRCA1 C Terminus (BRCT) domain 489 565 IPR001357 -
Tpr6g3335 703 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 325 450 IPR013083 -
Tpr6g3335 703 ProSiteProfiles BRCT domain profile. 599 703 IPR001357 -
Tpr6g3335 703 Pfam Zinc finger, C3HC4 type (RING finger) 32 71 IPR018957 GO:0046872
Tpr6g3335 703 SMART BRCT_7 601 697 IPR001357 -
Tpr6g3335 703 SMART BRCT_7 486 568 IPR001357 -
Tpr6g3335 703 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 12 105 IPR013083 -
Tpr6g3335 703 Gene3D BRCT domain 488 594 IPR036420 -
Tpr6g3335 703 SUPERFAMILY BRCT domain 603 702 IPR036420 -
Tpr6g3335 703 ProSitePatterns Zinc finger RING-type signature. 47 56 IPR017907 -
Tpr6g3335 703 Gene3D BRCT domain 601 697 IPR036420 -
Tpr6g3335 703 ProSiteProfiles BRCT domain profile. 489 578 IPR001357 -
Tpr6g3335 703 CDD BRCT_Bard1_rpt1 493 571 - -
Tpr6g3335 703 Pfam PHD-like zinc-binding domain 369 447 - -
Tpr6g3335 703 PANTHER BRCA1-ASSOCIATED RING DOMAIN PROTEIN 1 13 702 - -
Tpr6g3335 703 SMART ring_2 32 71 IPR001841 -
Tpr6g3335 703 PANTHER BREAST CANCER TYPE 1 SUSCEPTIBILITY PROTEIN BRCA1 13 702 IPR031099 GO:0006281|GO:0006974
Tpr6g3335 703 Pfam BRCT domain, a BRCA1 C-terminus domain 601 702 IPR001357 -
Tpr6g3335 703 SUPERFAMILY BRCT domain 492 579 IPR036420 -
Tpr6g3335 703 MobiDBLite consensus disorder prediction 217 246 - -
Tpr6g3335 703 ProSiteProfiles Zinc finger RING-type profile. 32 72 IPR001841 -
Tpr6g3335 703 SUPERFAMILY RING/U-box 29 95 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g3335 Tpr-Chr6 35990382 35996904 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g3335 522 635 Core DNA Replication Machinery Family AT4G02110 31.667 3.05e-06 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g3335 K10683 - gmx:100784883 929.858
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr6g3335 6 35990382 35996904 Tpr6g3335 6 35990382 35996904 ECH