Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g3326 ATGGGGAGTAGGGTTAGGCAACCGAGGAAGAGATTGCAGAAGATAATGAGCTGTCTTTGTTCGGGGGAGATTGTAAAAGAACAAGAAGAAGATACAATGGTTCCTAGTTCGTCTGAATCACTTGCAACCAAGGAGTTTTTTTCTGCAACGGCAAGTGGATTTTCTGGCCAAGATGGACAAGTTGAGAGGAGGTTGGATTCTGGTAATATAGAACAAGCTGAATTGTCGTTGCGTGAGAGTGGCATCTTAAATTATGAGGAAGCTAGAGCTCTGTTAGGGAGATATGAATTTCAGGAAGGAAATATAGAAGCCGCTTTGCATGTTTTTGAAGGCATAAATATAGCTGCTGTGACTCCCAAGATAAAGGATTTTCTTGCCAAAAGCAGAGAACGCCCCAGGAGACGCTCTCGGAGTTACACTACTCCACCAATGTCTATACATACAGCTGGATTACTATTAGAAGCAATCTTGCTAAAGGCAAAATGTTTGCAGGTTCTTGGAAGGTTTGAAGAATCTGCCCAAACATGTAAAGTTATTCTGGACATGATTGAGTCTTCTTTACCTGAAGGCTTGCCTCAAAACTTTGGTGCCGAATGTAAATTGCAGGAGACTTTAAGCAAGGCGGTTGAGCTACTTCCAGAATTATGGATACTTGCTGATTGTCCACGTGAAGTTATTTTGTCTTACAGGCGTGCACTCCTTCACCAATGGAATCTTGACGCAGAGACCACAGCAAAAATTCAGAAAGAATTTGCCATTTTTCTTCTATATAGTGGAGCAGAAGAAATTCCCCCAGATTTTCGTTCCCATATGGACAGTTCATTTGTACCAAGAAATAACATTGAAGAGGCTATTCTTCTTTTAATGATTTTGCAAAGAAAAGTCTCTCTAAATAAAATTGAGAGGGATCCTTCAATTTTGGAGCACCTTTCGTTTGCTCTATCAGTTTCTGGGGATTTGACAGCTTTAGCCAACCAATGGGAAGAATTACCCCCTGGTACTATCAATCGAAGAGAAAGGTACCATGCACTTGCTCTTTGTTATTATGGAGCAGATAAGGACTTGGTGGCACATAATCTTCTTAAAAAGGTGTTGAGTAGCAGTGAGGATCCAAAACATGTTCCTGCTTTGTTAATGGCTTCTAAGATATGCTGTGAGAACCCTGAACTTGCAAAAGATGGGGTTAGCTACGCTTGCAGAGTGCGTGAGAACTTGGATGGAAAATGTAATCAGTTGGAAAGTCTCGCCAATTGCTTACTCGGCATTTCGCTTTCAACATACTCAAAATTTGCTGTTTCTAATTCGGAGACATTCGATAGACAATCCGAGGCACTTCATTCACTAGAAACTGCAAGCACTATGACCGGAACAAATGACCCTCTTGTACTTTACTATTTAAGTTTAGAATGTGCAGAACAAAGGAAGTTGGATTCTGCACTTCACTATGCAGAACGCTTTCTAAGCTTAGAAGCTGGGTCTAATATTAAAGGCTGGTTATTGTTAGCCCGGATATTATCAGCACAAAAACAGTTTTTAGATGCTGAATCTATTGTTGATTCTGCTTTGGATGGGACTGGAATATGGGATCAAGGAGTTTTGTTGCGAACAAAAGCTAAACTTCAAATTGCACAGGGGAAGGTGCCAAGTGCCATTGAGACATATATTCGGCTTCTTGCTATTTTTCTGGTTCAGAGAAAAACTTTTGGTTCAAGAACGAAGCTATATAAGGATGGCAGAGATCATGCTAGGAACTTGGAAGTGGAAATATGGCATGATCTTGCTTATGTTTACATAAGTCTGTCACGGTGGCATGATGCAGAGGTGTGTCTTTCGAAATCTAAGGCCATCAAACTATACTCTGCTTCTAGATGCCATGTAATAGGTACTATGCTCGAAGCAAAGGGTCTTTACAAAGAGGCTCTAAAATCTTTTCGTGACGCTTTGAACCTTGATCCTACACATGTCCCTAGCTTGATATCAACTGCTGCCGTTCTTAGACAGTACGATACTCCATCAAATCCTGCCGCTCGAAGCTTTCTAATGGATGCACTAAGGCTTGACAAAACTAATGCTTCTGCTTGGCATCATCTTGGCATTCTTCACAAGGCTGAAGGTAGAGTGTTTGAAGCTGCAGAATGTTTTCAGGCAGCAAACTCTCTTGAAGAAACAGAACCAGTGGAGCCTTTCAGATGA 2193 0.4122 MGSRVRQPRKRLQKIMSCLCSGEIVKEQEEDTMVPSSSESLATKEFFSATASGFSGQDGQVERRLDSGNIEQAELSLRESGILNYEEARALLGRYEFQEGNIEAALHVFEGINIAAVTPKIKDFLAKSRERPRRRSRSYTTPPMSIHTAGLLLEAILLKAKCLQVLGRFEESAQTCKVILDMIESSLPEGLPQNFGAECKLQETLSKAVELLPELWILADCPREVILSYRRALLHQWNLDAETTAKIQKEFAIFLLYSGAEEIPPDFRSHMDSSFVPRNNIEEAILLLMILQRKVSLNKIERDPSILEHLSFALSVSGDLTALANQWEELPPGTINRRERYHALALCYYGADKDLVAHNLLKKVLSSSEDPKHVPALLMASKICCENPELAKDGVSYACRVRENLDGKCNQLESLANCLLGISLSTYSKFAVSNSETFDRQSEALHSLETASTMTGTNDPLVLYYLSLECAEQRKLDSALHYAERFLSLEAGSNIKGWLLLARILSAQKQFLDAESIVDSALDGTGIWDQGVLLRTKAKLQIAQGKVPSAIETYIRLLAIFLVQRKTFGSRTKLYKDGRDHARNLEVEIWHDLAYVYISLSRWHDAEVCLSKSKAIKLYSASRCHVIGTMLEAKGLYKEALKSFRDALNLDPTHVPSLISTAAVLRQYDTPSNPAARSFLMDALRLDKTNASAWHHLGILHKAEGRVFEAAECFQAANSLEETEPVEPFR* 731
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g3326 730 PANTHER PROTEIN NPG1 8 730 IPR043376 -
Tpr6g3326 730 SUPERFAMILY TPR-like 341 560 IPR011990 GO:0005515
Tpr6g3326 730 Pfam Tetratricopeptide repeat 622 654 IPR019734 GO:0005515
Tpr6g3326 730 PANTHER TETRATRICOPEPTIDE-LIKE HELICAL DOMAIN-CONTAINING PROTEIN-RELATED 8 730 - -
Tpr6g3326 730 Gene3D Tetratricopeptide repeat domain 573 727 IPR011990 GO:0005515
Tpr6g3326 730 SMART tpr_5 153 186 IPR019734 GO:0005515
Tpr6g3326 730 SMART tpr_5 587 620 IPR019734 GO:0005515
Tpr6g3326 730 SMART tpr_5 621 654 IPR019734 GO:0005515
Tpr6g3326 730 SMART tpr_5 460 493 IPR019734 GO:0005515
Tpr6g3326 730 SMART tpr_5 691 724 IPR019734 GO:0005515
Tpr6g3326 730 SUPERFAMILY TPR-like 587 712 IPR011990 GO:0005515
Tpr6g3326 730 Gene3D Tetratricopeptide repeat domain 59 566 IPR011990 GO:0005515
Tpr6g3326 730 ProSiteProfiles TPR repeat profile. 621 654 IPR019734 GO:0005515
Tpr6g3326 730 ProSiteProfiles TPR repeat profile. 691 724 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g3326 Tpr-Chr6 35861576 35868820 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g3326 5 730 Calmodulin-binding Proteins AT4G28600 54.521 0.0 725
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g3326 K21843 - gmx:100784353 1069.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr6g3326 6 35861576 35868820 Tpr6g3326 6 35861576 35868820 ECH
Tpr1g4022 1 45276570 45282135 Tpr6g3326 6 35861576 35868820 PCT