Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g3319 ATGGATTCGGCGAGGAGTTGGTTATCGAAGTTTCAACCGCGAGATAAATTAAGAGCTTCAACGAGGAAGAAAGATGATGTTAATATCGGTAATATCGGAATTGAAGATTCCAATGCACCTCTTGATGATGATGATGCTCTTTCTAGTGTCACCAAGCAGAAGGTTGCCGCTGCTAAACAATATATTGAGAATCATTACAAGGAACAAATGAAGAATCTTCAAGAGAGAAAAGAGCGTCGAACAATCTTGGAAAAGAAGTTGGCTGATGCCGATGTCTCTGAGGAAGATCAAAATAATCTACTTAAATTTTTAGAAAAGAAGGAAACAGAATATATGCGTCTTCAGAGGCATAAAATGGGTGTTGAGGATTTTGAGATGTTAACTATGATTGGAAAAGGTGCATTTGGGGAGGTTAGAGTGTGTAGGGAAAAGACTACAGAGCATGTATATGCAATGAAAAAGCTAAAGAAATCAGAGATGCTTCGAAGAGGCCAGGTAGAACATGTCAGAGCTGAGAGGAATCTACTTGCAGAGGTTGACAGCAATTGCATAGTTAAACTTTATTGTTCTTTCCAGGATGATGAGTATCTATATCTTATTATGGAGTATCTTCCGGGAGGGGATATGATGACTCTTCTTATGAGAAAGGATACATTAACCGAAGACGAAGCCCGATTTTATGTAGGAGAAACAGTTCTGGCTATCGAATCTATACATAAACACAATTATATACATAGGGATATTAAACCCGACAACTTATTACTTGATAAATATGGGCACTTGAAACTATCAGATTTTGGACTATGTAAACCGTTAGACTGTAGTACACTTGAAGAATCAGATTTGTCTATTGGTCAGAATGCAAATGGAACTGCACAAAATGATGATCGTACAGGTCCAAAACGTACTCAACAAGAACAGTTAGAAAACTGGCAGAAAAATAGGAGGACACTTGCTTATTCTACCGTCGGTACACCAGATTATATTGCTCCAGAAGTTCTATTGAAGAAAGGTTATGGGATGGAATGTGATTGGTGGTCACTTGGAGCTATTATGTATGAAATGTTGGTCGGATATCCACCTTTTTATTCCGATGATCCAATGTCAACGTGTAGAAAGATAGTAAATTGGAAATCTCATCTGAAATTTCCTGAAGAGGCAAGACTATCTCCAGAGGCCACAGATCTTATAAGTAACCTTTTGTGTAATGTCAACCAGAGACTGGGGTCAAATGGTGCAGCTGAAATAAAGTCTCATCCATTCTTTGAAGGTGTTCAATGGGAAAAGTTGTATCAAATGGAAGCAGCATTTATTCCAGAAGTCAATGACGAGTTAGATACTCAAAATTTTGAGAAATTTGAAGAGTCTGACAGCCAGACTCATTCATCATCAAGATCTGGTCCATGGAGAAAGATGCTTTCATCTAAGGACTTCAATTTTGTGGGATACACATACAAGAACTTTGATATTGTTAACGACTATCAAGTTCCTGGGATGACTGAGCTAAAGAAAACCTCCAAACCAAGGAGGCCATCTGTCAAGTCGTTGTTTGATGGCGATTCGGAGAATTCTGAGGCTTCTGATGTTTCAGAAGTGTCTGCAAACAATCAACCTACTCAATGA 1623 0.3845 MDSARSWLSKFQPRDKLRASTRKKDDVNIGNIGIEDSNAPLDDDDALSSVTKQKVAAAKQYIENHYKEQMKNLQERKERRTILEKKLADADVSEEDQNNLLKFLEKKETEYMRLQRHKMGVEDFEMLTMIGKGAFGEVRVCREKTTEHVYAMKKLKKSEMLRRGQVEHVRAERNLLAEVDSNCIVKLYCSFQDDEYLYLIMEYLPGGDMMTLLMRKDTLTEDEARFYVGETVLAIESIHKHNYIHRDIKPDNLLLDKYGHLKLSDFGLCKPLDCSTLEESDLSIGQNANGTAQNDDRTGPKRTQQEQLENWQKNRRTLAYSTVGTPDYIAPEVLLKKGYGMECDWWSLGAIMYEMLVGYPPFYSDDPMSTCRKIVNWKSHLKFPEEARLSPEATDLISNLLCNVNQRLGSNGAAEIKSHPFFEGVQWEKLYQMEAAFIPEVNDELDTQNFEKFEESDSQTHSSSRSGPWRKMLSSKDFNFVGYTYKNFDIVNDYQVPGMTELKKTSKPRRPSVKSLFDGDSENSEASDVSEVSANNQPTQ* 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g3319 540 ProSiteProfiles AGC-kinase C-terminal domain profile. 423 495 IPR000961 GO:0004674|GO:0005524|GO:0006468
Tpr6g3319 540 ProSiteProfiles Protein kinase domain profile. 124 422 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr6g3319 540 MobiDBLite consensus disorder prediction 517 540 - -
Tpr6g3319 540 CDD STKc_NDR_like 122 486 - -
Tpr6g3319 540 ProSitePatterns Protein kinases ATP-binding region signature. 130 153 IPR017441 GO:0005524
Tpr6g3319 540 SMART serkin_6 124 422 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr6g3319 540 ProSitePatterns Serine/Threonine protein kinases active-site signature. 243 255 IPR008271 GO:0004672|GO:0006468
Tpr6g3319 540 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 1 523 - -
Tpr6g3319 540 Gene3D Phosphorylase Kinase; domain 1 95 207 - -
Tpr6g3319 540 SMART pkinase_C_6 423 487 IPR000961 GO:0004674|GO:0005524|GO:0006468
Tpr6g3319 540 Gene3D Phosphorylase Kinase; domain 1 441 451 - -
Tpr6g3319 540 MobiDBLite consensus disorder prediction 1 23 - -
Tpr6g3319 540 Pfam Protein kinase domain 125 422 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr6g3319 540 Pfam Protein kinase C terminal domain 441 485 IPR017892 GO:0004674|GO:0005524|GO:0006468
Tpr6g3319 540 MobiDBLite consensus disorder prediction 501 540 - -
Tpr6g3319 540 Gene3D Transferase(Phosphotransferase) domain 1 317 440 - -
Tpr6g3319 540 MobiDBLite consensus disorder prediction 9 23 - -
Tpr6g3319 540 MobiDBLite consensus disorder prediction 285 306 - -
Tpr6g3319 540 SUPERFAMILY Protein kinase-like (PK-like) 97 477 IPR011009 -
Tpr6g3319 540 Gene3D Transferase(Phosphotransferase) domain 1 208 286 - -
Tpr6g3319 540 Coils Coil 66 86 - -
Tpr6g3319 540 PANTHER SERINE/THREONINE-PROTEIN KINASE 1 523 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g3319 Tpr-Chr6 35811376 35818723 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g3319 1 517 AGC Kinase Gene Family AT2G20470 78.378 0.0 845
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_NDR Tpr6g3319 Pkinase 8.1e-65 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g3319 K08790 - gmx:100783286 949.503
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr6g3319 6 35811376 35818723 Tpr6g3319 6 35811376 35818723 ECH
Tpr6g3319 6 35811376 35818723 Tpr1g2677 1 30769148 30776339 PCT
Tpr1g4030 1 45371495 45381557 Tpr6g3319 6 35811376 35818723 PCT