Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g3314 ATGAGCCATCTTTCAATTCCGCCTGGTTTTGCATCCCTAACATCTTTTATCCTCAAAAGGGATGACAAGGTTAAGAAAACCAATAAGTCCGACTCAATTCCGACAGAGACTAATCCTGAGATGGATGACAATGCTTCATATAATCAGATTTATACACAACGGCCGTGGATAATAGAGGACCAGAGCAAGCGCAAACCTGAGGAATCTCACACAGAACATCTTCCTGGGGTTAAGTTGAATTCCCTTAGAAATTCTTCTCGTCCAAAAGGGACCACATATGGATGTCCAAAATGCAGTAATTGTGTAAAGGTAACAGCAAGGTGGCATCCTGAGGATGCAAGAAGAGAAATTCTGGAGGAAGCTCCCATATTCTGTCCAACAGAAGAGGAATTCAAAGACACACTTAAATATATCGCAAGCATACGTTCAAAAGCAGAACCTTATGGAATTTGCCGTATAGTCCCTCCTACTAGCTGGGAACCACCATGTACTCCTGAGAAAAAGAATGTATTGGAAAACTCTGAATTTTTTGCTCGAATTCAGCGAATTGATGGGCACCAATTTCAGGATGCACCAGAAACTATGGCTAGCTCTCATGATACTACAGAAACCAAGAGAAGAAAAGTGATGAAAGTAGCCGCGGACTCTCATCTTGGTAATAGAAGCACTTGCACCCCTAATAGCGGGAATGTTGAAGGCGGTGACAATGAGACTGAACATGGTCCTAAATTCACTATCAAAACATTTAAGAAATTGGCAGATGAATTTGAAATCCAATACTTCAACTACAAGAAGAAGAAGAACTCAGCCATACATCTACAGCACTGGGAACCATCTGTTGAGAATATTGAAGATGAATACAGACGTATTGTTCAAAATCCAACTGAAGAAATTGAGGTTCTCTGTTGTGACACTTTGGAGGCTGGAGAATTTAGCAGTGGATTTCCAATTCCAACGGTTTCTGATCCTAAAAAGGCGAATACTTACCCTGAATATTTGAATTCTGGATGGTACTTAAAAAACATGCTCTCACTCCCAGGTTCTCTTCTTTCTTTTGAAAGCCCTGAAGTTGCACGCAAATTTTCCCCTAGGGTACAAGTAGGAATGTGCTTTTCTCCACTCAAATGGAAAGTTGAAGAGCACCAATTATACTCATTGTGTTGCTTGCATTTGGGGGAACCCAAAGTATGGTATAGTGTCCCAGGAAGATTTGCTGCTGACTTTGAAACAATTTCGAAGAAGTATCTCCGAGCGCTAAATATGTATGCAGGACAGCCTGATACGCATGATAATCTGGCTATGCAGTTATCCTGCTCAATATTGAAGGAAGTGGGTATACCAGTATATCGTTGTGTTCAGCATCCTCGTGAGTTTGTTCTTGTCTTACCTGGAGCATATCATTCAGGATTTGATTGTGGTTTCAACTGTTCTGAAGTAGCAAGTTTTGCTCCTCTTGAGTGGCTGCCACATGGGCAGAATGTAGTAGAACTATACTGTGAACAGAAGAGAAAGACATTAATTTCATACGATAAGCTGTTACTGGGAGCAGCAAGGGAAGCTGTGAGGGCCCGATGGGAAATTGATATATGTATGAAGAGCACGCCCGACAACTTAACATGTAAAGATGCATATCAAAGAGATGGGATCTTAACAAGAGCTTTGAATTCTCGCCTCAGGAGTGAAAGTTTGAAGAGGAAATTCATTTCCACTTCATTCAAATCACAAAAAATGAAAGAAAATTTTGATGCCAGTTGTAGAAGGGAATGTAGCATATGTCTGCGTGATTTATTCCTGTCTGCTGTTGGCTGTTCGTGTACAGATGACAAGTTTGCGTGTCTTGATCATGTGAAACAGCTTTGTTCTTGCCCTTGGTCATACAAAATTCTCTTCTACTGTTATGAAATCAGTGAATTGGAGGTTCTTCATCAAGCTTTGGATGGAAAACTAAGTGCAGTCTATAAATGGGCTAAAGAGGATCTTGGTTTAACTGTGCGCTCAGTTGCCACCAAGAGATCAAACGAAACCCCAGTAAAAGTAAATGATTCAGAAGGCTTGTTGAAAGAACCTATGTCGCGGTGGGCACAAGATGCATACAACAAGTGGAATCGGTGTAAATCGCAGGCAACACCAAATGCTTCAGAGGGGAAACAAAGAGAAAAGGCCTTCGAAGCCCAGCAGACCCCTAGTAGCACTCACAATAGTTCGTCCGCCGTTCATCCAATAAAGAACACAACTTTACTTCATTCAACAATATCAAACGACATCAAAGCTAAAGAGAAAATGGTGGGGCACAATTCTGTTGCAACAAGCATCGGCGGAGGAAGTAATTCTGCTGGGATCAAACCTGATAGCAAGGCAATTGGGGATAAGTTCCCGACTTCAAAGAAAGTAGAAGACCCAAAAGTTTCTGAAACTCCACGTTCGCGTTTCTTGTCTTTTGTACAGGAAAACATTTTGGTTGATGTTTCGTCTAGTTCTTCAGAATCCGATTAG 2493 0.4136 MSHLSIPPGFASLTSFILKRDDKVKKTNKSDSIPTETNPEMDDNASYNQIYTQRPWIIEDQSKRKPEESHTEHLPGVKLNSLRNSSRPKGTTYGCPKCSNCVKVTARWHPEDARREILEEAPIFCPTEEEFKDTLKYIASIRSKAEPYGICRIVPPTSWEPPCTPEKKNVLENSEFFARIQRIDGHQFQDAPETMASSHDTTETKRRKVMKVAADSHLGNRSTCTPNSGNVEGGDNETEHGPKFTIKTFKKLADEFEIQYFNYKKKKNSAIHLQHWEPSVENIEDEYRRIVQNPTEEIEVLCCDTLEAGEFSSGFPIPTVSDPKKANTYPEYLNSGWYLKNMLSLPGSLLSFESPEVARKFSPRVQVGMCFSPLKWKVEEHQLYSLCCLHLGEPKVWYSVPGRFAADFETISKKYLRALNMYAGQPDTHDNLAMQLSCSILKEVGIPVYRCVQHPREFVLVLPGAYHSGFDCGFNCSEVASFAPLEWLPHGQNVVELYCEQKRKTLISYDKLLLGAAREAVRARWEIDICMKSTPDNLTCKDAYQRDGILTRALNSRLRSESLKRKFISTSFKSQKMKENFDASCRRECSICLRDLFLSAVGCSCTDDKFACLDHVKQLCSCPWSYKILFYCYEISELEVLHQALDGKLSAVYKWAKEDLGLTVRSVATKRSNETPVKVNDSEGLLKEPMSRWAQDAYNKWNRCKSQATPNASEGKQREKAFEAQQTPSSTHNSSSAVHPIKNTTLLHSTISNDIKAKEKMVGHNSVATSIGGGSNSAGIKPDSKAIGDKFPTSKKVEDPKVSETPRSRFLSFVQENILVDVSSSSSESD* 831
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g3314 830 Pfam JmjC domain, hydroxylase 365 481 IPR003347 -
Tpr6g3314 830 MobiDBLite consensus disorder prediction 775 805 - -
Tpr6g3314 830 ProSiteProfiles JmjN domain profile. 121 162 IPR003349 -
Tpr6g3314 830 SUPERFAMILY Clavaminate synthase-like 242 526 - -
Tpr6g3314 830 MobiDBLite consensus disorder prediction 705 741 - -
Tpr6g3314 830 SMART JmjN_1 120 161 IPR003349 -
Tpr6g3314 830 Pfam C5HC2 zinc finger 589 639 IPR004198 -
Tpr6g3314 830 Pfam jmjN domain 122 155 IPR003349 -
Tpr6g3314 830 MobiDBLite consensus disorder prediction 722 741 - -
Tpr6g3314 830 MobiDBLite consensus disorder prediction 62 88 - -
Tpr6g3314 830 MobiDBLite consensus disorder prediction 788 805 - -
Tpr6g3314 830 MobiDBLite consensus disorder prediction 23 42 - -
Tpr6g3314 830 PANTHER INACTIVE LYSINE-SPECIFIC DEMETHYLASE JMJ19-RELATED 68 732 - -
Tpr6g3314 830 SMART cupin_9 331 499 IPR003347 -
Tpr6g3314 830 ProSiteProfiles JmjC domain profile. 334 499 IPR003347 -
Tpr6g3314 830 Gene3D Cupin 106 483 - -
Tpr6g3314 830 PANTHER LYSINE-SPECIFIC DEMETHYLASE 68 732 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g3314 Tpr-Chr6 35703966 35709942 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g3314 5 664 JUMONJI Transcription Factor Family AT1G08620 45.894 3.57e-178 543
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Tpr6g3314 JmjC 3.4e-28 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g3314 - - gmx:100804864 1010.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr6g3314 6 35703966 35709942 Tpr6g3314 6 35703966 35709942 ECH