Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g3309 ATGCATATAGGCCAAATGGATATAACTTCAGCAAAATGTGTAATCAACAGCATTTCTCGATTCATTCATCTAGTTTCTTGCCAAACGTTGAAACCTATGCCCCTTCAGAAGAACTGTAATACTATGGTTGGTGTGTTGAGGTGTTTGAAACCAGTCCTTGATAATGTTGTGGATTGCGAAATCCCTTTGGATGACAATCTGTATAAAGAATGTGAAGAATTGGATGTACATGTTAACAAAGCTAGGGAGTTCGTTGAAAAATGGAGCCCAAAGATGAGCAGGATCCACAGTGTTCTTCAAAGTGGAGAATTGTTAATAAAGTTACAAAACACTTCGCTTAGGATTTGTCACACAATTGATATATCCCCAAAGTTAACTTCATCTGCCTCAGTTTTGGATAATCTTCAGCACCATATACAGGAACTTCAGTGTCTTGAGAAGGAACCAACAACTGTCTATATAGAAGAAGTGCTGAGAAATCAAAAGGAAGACACTAAACTTAGCTATGAACATTTAAGGGAAATCATAGAATTACTTAAATTGACATCAAATCAGGAGCTTCTGAAAGAAAGTATTGCTGTTGAAAAGGAAAGGTTAAACGCCGAAGTCAACAAAACAAAAGGGGAGTTAGATGAATTTAACCAAATTGTGAATCTTGTTTGCAATTTACGTGATCATGTGATGAAAACTAAATGCCCTGAAGTCAAAAGTGGTGTCTCAGTTCCAACATACTTTCGATGCCCTTTATCGCTCGAACTCATGTTGGATCCTGTTATTGTTGCTTCAGGTCAAACATATGAGAGACAGTCCATCCAAACATGGCTTGATAATGGGCTGAATGTTTGTCCGAAGACTCACCAGAGACTAACTCACACAAATCTTATTCCTAATTATACTGTTAAAGCTATGATAACAAATTGGTGTGAAGAAAAGAATGTCGAACTTCCCAATAACTCAAAGCAGAGTAATTCTACTCAGAGTTCACCCCCGACAGATCATTTATTGCATCAAGATTTTGACCGTGTCTGTAGTTTCGGGTCTTCACATAGTAGCAACTCCAATTCAAAATCATCTCTTCAAACTGGAAATGCATTTGAGAAGCAAAAAGGTGACAACTCTTCCAGAGTAAGCAGTGAGTCCAATAGATGCGAGAACGGTGAAACAGAAAAGTTTGAGCAACAATCCCTTGCTCCTTCATGTAGTCACAGCAGAAGTGAGTCATTTTCAAGTTCTATTTCTAGTACTGATTGTGTACCTTCAGTTTCAAAAAACGTGTCAGGTATATCAAAAACGTTATCTGGAGATATTCATAATAATATGTTTCCTGCTTCTCCTGCATATAAAGAATTCGGGGATTTTCCAACAGTACCACAAGAGCAATTTCAAAGCCCTGGATCAAAAAATTCAACAGTGGAGAATGAACATAAGTACAATAACAATAATAATATTGTTATTACTAGCCATTCAAAAGATGATGCCCGTCCTGCTTCCAACTCGGAATCAGATAAATTGATCACCACATCTCATGTCAGTAAGTTGATCGAAGATCTACAGAGCCAATCAAATGAAACACAAGCTGCTGCTGCTGAAGAATTGCGACTCCTTACCAAGTTTAACATGGAAAACCGTATCATTGTAGGGCAATGTGGGGCTATCATGCATTTACTTCCATTGTTATATTCAGAGATGAAGATTACACAAGAGCATGCTGTGACAGCAATACTGAATTTGTCGATTAATGAAGACAACAAGACCTTGATCATGGAAGCAGGAGCCATAGAACCGCTTATCTATGTTTTGAAGACAGGAAACAACGGTGCCAAGGAAAATTCTGCTGCAGCTCTATTCAGCCTCTCGGTACCAGAAAACAATAAGGCGAAAATTGGTCGTTCCGGTGCTATTAAAGCGTTAGTGGAACTTCTAGCTTCTGGAACTCTTAGAGGGAAGAAAGATGCTGCAACTGCTTTATTTAACCTATCAATATTTCACGACAATAAAGCTCGTATGGTTCAAGCTGGAGCAGTGAAGTTTCTGGCTATGCTATTGGATCCTGCTGATGGAATGGTTGACAAGGCTGTAGCTCTTTTGGCAAACCTATCAACGATCCCAGAAGGTCAAGTAGAAATTGTTAGGGAAGGGGGGATACCCTTACTGGTTGAACTCGTGGAGTCGGGTTCTCATAGGGGAAAGGAAAATGCTGCATCCATTCTCTTGCAACTAAGCCTCCATAGCCGTAGGTTTTGTACCCTGGTTCTTCAAGAAGGAGCTGTACCTCCTATAGTTGCATTATCCCAGTTTGGTACGCCAAGAGCAAAGGAAAAGGCACAACAGCTTCTCAGTCATTTCCGTAGTCAGCGCACAGAAGCTCCCGGTAGAGGAAAATCATGA 2388 0.397 MHIGQMDITSAKCVINSISRFIHLVSCQTLKPMPLQKNCNTMVGVLRCLKPVLDNVVDCEIPLDDNLYKECEELDVHVNKAREFVEKWSPKMSRIHSVLQSGELLIKLQNTSLRICHTIDISPKLTSSASVLDNLQHHIQELQCLEKEPTTVYIEEVLRNQKEDTKLSYEHLREIIELLKLTSNQELLKESIAVEKERLNAEVNKTKGELDEFNQIVNLVCNLRDHVMKTKCPEVKSGVSVPTYFRCPLSLELMLDPVIVASGQTYERQSIQTWLDNGLNVCPKTHQRLTHTNLIPNYTVKAMITNWCEEKNVELPNNSKQSNSTQSSPPTDHLLHQDFDRVCSFGSSHSSNSNSKSSLQTGNAFEKQKGDNSSRVSSESNRCENGETEKFEQQSLAPSCSHSRSESFSSSISSTDCVPSVSKNVSGISKTLSGDIHNNMFPASPAYKEFGDFPTVPQEQFQSPGSKNSTVENEHKYNNNNNIVITSHSKDDARPASNSESDKLITTSHVSKLIEDLQSQSNETQAAAAEELRLLTKFNMENRIIVGQCGAIMHLLPLLYSEMKITQEHAVTAILNLSINEDNKTLIMEAGAIEPLIYVLKTGNNGAKENSAAALFSLSVPENNKAKIGRSGAIKALVELLASGTLRGKKDAATALFNLSIFHDNKARMVQAGAVKFLAMLLDPADGMVDKAVALLANLSTIPEGQVEIVREGGIPLLVELVESGSHRGKENAASILLQLSLHSRRFCTLVLQEGAVPPIVALSQFGTPRAKEKAQQLLSHFRSQRTEAPGRGKS* 796
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g3309 795 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 240 315 IPR013083 -
Tpr6g3309 795 PANTHER U BOX DOMAIN-CONTAINING 11 790 - -
Tpr6g3309 795 Gene3D - 458 583 IPR011989 -
Tpr6g3309 795 SUPERFAMILY ARM repeat 504 782 IPR016024 -
Tpr6g3309 795 Coils Coil 189 216 - -
Tpr6g3309 795 Gene3D - 689 789 IPR011989 -
Tpr6g3309 795 Gene3D - 584 688 IPR011989 -
Tpr6g3309 795 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 550 592 IPR000225 GO:0005515
Tpr6g3309 795 MobiDBLite consensus disorder prediction 347 381 - -
Tpr6g3309 795 SMART arm_5 621 661 IPR000225 GO:0005515
Tpr6g3309 795 SMART arm_5 703 742 IPR000225 GO:0005515
Tpr6g3309 795 SMART arm_5 539 579 IPR000225 GO:0005515
Tpr6g3309 795 SMART arm_5 580 620 IPR000225 GO:0005515
Tpr6g3309 795 SMART arm_5 662 701 IPR000225 GO:0005515
Tpr6g3309 795 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 673 714 IPR000225 GO:0005515
Tpr6g3309 795 SUPERFAMILY RING/U-box 239 316 - -
Tpr6g3309 795 MobiDBLite consensus disorder prediction 458 480 - -
Tpr6g3309 795 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 632 674 IPR000225 GO:0005515
Tpr6g3309 795 SMART Ubox_2 244 307 IPR003613 GO:0004842|GO:0016567
Tpr6g3309 795 Pfam Armadillo/beta-catenin-like repeat 541 578 IPR000225 GO:0005515
Tpr6g3309 795 Pfam Armadillo/beta-catenin-like repeat 623 660 IPR000225 GO:0005515
Tpr6g3309 795 MobiDBLite consensus disorder prediction 347 399 - -
Tpr6g3309 795 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 3 11 790 - -
Tpr6g3309 795 ProSiteProfiles U-box domain profile. 240 314 IPR003613 GO:0004842|GO:0016567
Tpr6g3309 795 Pfam U-box domain 241 312 IPR003613 GO:0004842|GO:0016567
Tpr6g3309 795 CDD RING-Ubox_PUB 245 287 IPR045210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g3309 Tpr-Chr6 35659966 35665901 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g3309 6 795 U-box Gene Family AT3G54790 52.075 0.0 692
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g3309 - - mtr:MTR_7g097020 1209.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr6g3309 6 35659966 35665901 Tpr6g3309 6 35659966 35665901 ECH