Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g3306 ATGGATGGCAGATGGGGAGGCGTGAGAGTGGTGGAGGCAGTTGAGGGTGTGGGAGGAGGAGATGTTGGGGGAGTGTCGGACTTACTTCTTGACATTGTTTTGCAGGATCAGACTATTGATAGGTTGCAGTGGCGTCCAAACCCTGACATAGGCTACACTGTCGGGGGAGCTTATCAGCTTTTGACTTCTCATGCTTCTGTTACTTTGGATGATGCGGAAAACCTTATATGGCACTCTCAGGTTCCTTTGGAGGTTTCCATCTTTGCGTGCCTTTGCTTGTTAACCAAGCAAACGGAAATAAAAGAGAGTGACACAAAGATCACTAACAGCCATAATACTGAACAAGTTGGTTCCGTTGAAGAACCTATATCAAATTATCAAAGCAAGGAAATATTTAATGAGTGCAGGAAAAATCATGCTTCAAGCATTGGGGGCTATGCTCTTGATGGTTGTTGCGAGTTTTTACCTGCAGGTGTTGAAGGTACTACTGATTTTTTTAAATGTGCGGCTTGTTTTTGTCATAAAAATTTTCACCGCAAAGAAACCGTTGCTAGCGAACCGACTCATTTTCTATCCAAAATCACCTACATTCCTCAGCCAACTCTCATCTCAACGGTCTTTCAAACTTCGAATGGTTACCACCATGTGACTGGACCATCCAGCGGGACCACAACTGCACATGCTTTTCCTGCTGTTGTTATCCATGATGGGGCCCACTTTCATGTTACCGATCAAATCAATGGTGGTGGTACTAGTGGTGGCGGAGAAGGTTCATTGAGCTCTAAGAAAAGGTTTAGGACTAAATTTAGTCATGAACAAAAGGAGCAAATGTTGGATTTTGCTGTGAAAATAGGTTGGAGGATTAAGAAACAAGATCAAAATGTTGTTGAGATATTTTGCAACAAGATTGGGGTCAAGTTTCAAGTGTTTAAGGTTTGGATGCAAAACAATAGGCATACCATTGGCAAAAAGCCTTAG 978 0.4274 MDGRWGGVRVVEAVEGVGGGDVGGVSDLLLDIVLQDQTIDRLQWRPNPDIGYTVGGAYQLLTSHASVTLDDAENLIWHSQVPLEVSIFACLCLLTKQTEIKESDTKITNSHNTEQVGSVEEPISNYQSKEIFNECRKNHASSIGGYALDGCCEFLPAGVEGTTDFFKCAACFCHKNFHRKETVASEPTHFLSKITYIPQPTLISTVFQTSNGYHHVTGPSSGTTTAHAFPAVVIHDGAHFHVTDQINGGGTSGGGEGSLSSKKRFRTKFSHEQKEQMLDFAVKIGWRIKKQDQNVVEIFCNKIGVKFQVFKVWMQNNRHTIGKKP* 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g3306 325 Gene3D - 248 322 - -
Tpr6g3306 325 SUPERFAMILY Homeodomain-like 249 323 IPR009057 -
Tpr6g3306 325 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 132 181 IPR006456 -
Tpr6g3306 325 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 262 318 IPR006455 -
Tpr6g3306 325 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 1 110 324 - -
Tpr6g3306 325 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 110 324 - -
Tpr6g3306 325 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 132 181 IPR006456 -
Tpr6g3306 325 Pfam ZF-HD protein dimerisation region 131 182 IPR006456 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g3306 Tpr-Chr6 35644451 35647976 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g3306 132 321 ZF-HD Transcription Factor Family AT4G24660 42.708 1.22e-44 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Tpr6g3306 ZF-HD_dimer 2.8e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g3306 - - mtr:MTR_2g076780 251.906