Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g3292 ATGAATTTTGTTAAGAAGAATGGTGAAGTGAGATTGCCTCCAGGGTTCCGTTTCCACCCAACAGATGAAGAACTTGTTGTTGAATACTTGAAGCGTAAGGTCTTGTCTTTACCTTTACCCGCTTCCATCATTCCTGAGGTTGATCTTTGCAAGTCTGATCCATGGGATTTACCAGGTGATTTGGAACAAGAGAGATACTTTTTCAGTACTAAAGAACCCAAATACCCAAATGGTAATCGATCCAACAGAGCTACTAACTCTGGTTACTGGAAAGCAACTGGTTTGGACAAACATATCTCCAATGTTGGGGGGGGAATCAAGAAGACTCTTGTTTTCTACAAAGGCAAACCACCTCATGGTTCAAGAACTGATTGGATCATGCACGAATATCGTCTCACTCCCTCCAACTACTCTAACTCTAACCCCATGAATGAAAATTGGGTTCTTTGTCGCATATTTCTCAAGAGAAGAGGTGGTTCTAATTCTAAAAATGGAGAGGACAGTAGTAGTACTATCCCAAGTCTGTTGTTGGGAGTCAAACCCAAAGGAGGCCAGGAGGTGGAGGTGAACAACAACAACAACTCAAGTTCAAAGGTGTTGGTTTTCTATGACTTTTTGGCACAGAACAACAACAACAACACTACTGATGCCTACTACTCCTCCTCCTCCTCAATCTCACCAGCTACAAGTGGTATCACTGATGAATTGGGTGAACATGAAAATGAAGACAGTAGTAGCTCATTCACAATCCTCCCATCTTGTCTTACAAATAAACAACCTTAA 783 0.4163 MNFVKKNGEVRLPPGFRFHPTDEELVVEYLKRKVLSLPLPASIIPEVDLCKSDPWDLPGDLEQERYFFSTKEPKYPNGNRSNRATNSGYWKATGLDKHISNVGGGIKKTLVFYKGKPPHGSRTDWIMHEYRLTPSNYSNSNPMNENWVLCRIFLKRRGGSNSKNGEDSSSTIPSLLLGVKPKGGQEVEVNNNNNSSSKVLVFYDFLAQNNNNNTTDAYYSSSSSISPATSGITDELGEHENEDSSSSFTILPSCLTNKQP* 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g3292 260 MobiDBLite consensus disorder prediction 229 260 - -
Tpr6g3292 260 ProSiteProfiles NAC domain profile. 12 155 IPR003441 GO:0003677|GO:0006355
Tpr6g3292 260 SUPERFAMILY NAC domain 9 155 IPR036093 GO:0003677|GO:0006355
Tpr6g3292 260 MobiDBLite consensus disorder prediction 243 260 - -
Tpr6g3292 260 Pfam No apical meristem (NAM) protein 13 132 IPR003441 GO:0003677|GO:0006355
Tpr6g3292 260 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 4 249 - -
Tpr6g3292 260 PANTHER NAC DOMAIN-CONTAINING PROTEIN 83-LIKE 4 249 - -
Tpr6g3292 260 Gene3D NAC domain 21 158 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g3292 Tpr-Chr6 35510725 35512366 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g3292 6 247 NAC Transcription Factor Family AT5G13180 56.855 5.85e-88 259
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Tpr6g3292 NAM 7.6e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g3292 - - gmx:100170709 295.049