Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g3288 ATGGATATTAATATTGGCAAGAGCATGAAGCAGGGGAACAAGAAGTCAGGAGGAGGCCTCATCACAAAAACATGGGAGAGATGCAAGTCCATAGGAAGAGGAGGGCACAAAAGTAAATATCCATCGTCGGTGACTCCAACGACAACAAGGAGCAAATCATGGCCTAATTTGCGAGGTGGAGGAGAAAAGGGAGGAAAGAAAGGCGGTGTTGTGGCTCCGGAAGGATGCTTTTCGGTTTACGTTGGGCCTCAAATGCAAAGGTTTGTGATCAAAACTGAGTATGCTAACCATCCTTTGTTCAAGATGTTGCTTGAAGAAGCTGAATCAGAATATGGTTATAGCTGCCAAGGACCTTTGGCCCTTCCTTGTAATGTTGATGTCTTTTATAAGGTTTTGATGGAAATGGATAGTGAAGCTCCTCCTCCTCCTCATGGTTGTGCTTTCGGAAACCGATCTCGTTCTTCTTATCATCTTCTCAGCCCTTCCAGAATGATTGTCTTAAACAACTTCTGA 513 0.4425 MDINIGKSMKQGNKKSGGGLITKTWERCKSIGRGGHKSKYPSSVTPTTTRSKSWPNLRGGGEKGGKKGGVVAPEGCFSVYVGPQMQRFVIKTEYANHPLFKMLLEEAESEYGYSCQGPLALPCNVDVFYKVLMEMDSEAPPPPHGCAFGNRSRSSYHLLSPSRMIVLNNF* 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g3288 170 Pfam Auxin responsive protein 65 132 IPR003676 GO:0009733
Tpr6g3288 170 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 20 138 IPR003676 GO:0009733
Tpr6g3288 170 MobiDBLite consensus disorder prediction 40 55 - -
Tpr6g3288 170 PANTHER SMALL AUXIN-UP RNA-RELATED 20 138 - -
Tpr6g3288 170 MobiDBLite consensus disorder prediction 34 67 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g3288 Tpr-Chr6 35456064 35457172 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g3288 72 137 Calmodulin-binding Proteins AT5G20810 46.970 2.60e-17 73.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g3288 K14488 - gmx:100777217 207.223