Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g3280 ATGGCCTCATCTTTGGAGGACCTTCTTCGAGAAGAAGGATTCAAAGGAAGCAGCAAAAGAGTGCAAAGGTCAAGATCTTCCTTCCACCATGGTGCTTCAAGTGATCCACTTCACTCTTTAGAAGAGAGACTCTGTGTATCATCAAGTGAAAGAATCAAAACACAGAAAACAAAGTCTAAAGCAGCCTCAAGATATCAGATTAACAATACAAGAGACAATAAGAACACAAGATCAAGGGATAATAATAATGTTTTTATAGGAAACGAGATAAATCACGGACTGTTGAAAAACGATGAATCTGAGAAGAACAAGTCTTATAATTCATCAGAGAGTGATAGTGGATTTGAAGATGTTTATTCAGATCAAGTATCTGATGTGAAAAGAGGCAAAGACAAGTATTTTAAGGAAAAATTGGTTGAAAAGCCAATCAAGGATTCATATATGCTTAGACAATTGAGTGGAAATAGAAAGAATATAAAATACCAAAAAAATTCCCAAACTATATCTAATAGTAATAGCAAAAGCTTTGAGAATAGCAGGAACAAAAATAGCCATCAATTGCAAGCTGATTCTAGTCTGGCTATTGATGAAATTGCTGTGAAAGCACTAGTTTCCATTCTGAATGGATACACAGAAAGTTTCCTAAAAGACGAAGATTTTCGATCTGCGTTGCGCCACAATTGTTTCTCCTCCTTGAATTTTATTCAACTTGAGGAGGAAGAAAACAATTCTGAGACCAAAGTGATTACAAGTCTTGAGCAAGCAATTGACTGCATAGAAAAAACTGCTTGCGAGGAAGAACCTAAATCTGCAACAAATCTGAAAAGAGCAACAATGCAGCTTAGCATTATTGCAGGTTTGAGTTTGAATGATCTCAAGCACGATCTTACGTGCGGAATACCGAATTTCAAGTTATCAGCTTGTGCTCATCTTTACCTCAGTGTGGTTTATATGATACAAATAAAAAATAAAGTTTCGGCTAAGCATCTTTTGCAAGTCTTTTGTGATTCGCCTTTTCAGGCACGAACAATATTGTTGCCTGAACTTTGGGAACGTCTATTTTCTCCGCAATTTTCTCATTTGAAGAAATGGTATAACAACAAGGAAGGTGAAATTGTTGTAGATACACCAAGCAGAAAACCAAGAAAGTTAAAGATTCTTCAAAAAGTGTATAATGAAAATTTGGATTCAGGAACTCAAATTTTTGCTTTATATTACAAAGATTGGCTCAGTGAAGGAGTAGAAACTCCAACTATTCCTTCTATTGGAATTCCATCATTTTCTGTTACGAGTCGACAGGGAAGTTCATTTGCTCATTCTTTTGAGTCTGCTAGCTCAAATGAACCATTCTCACCACAAGCAATGGTCAGCAAGAAGCTATATGATTCTTTCTTTGGTGGATATAGTAAACCTCAAGTCTATGTTGTTGATGAAGATAAGGATGAAGATAGTTATGAAAATTGTGAGAGAGGCTCTTATGGTTCAACTGTCGTTAAAAAAACAGTAATATATGAATCCGAAACTGTTAAATTTATTGATCAAAGTGATGAAGATTTCACTCCAAGTGTTCCGGTTCATGCATTCCATCCTCAGAAAGGAACATCAAGGACAGCTGCAGAAGAATGGAAAGAGAAGAATTCCAGAAATGCTACTAGAAAATATTTCTCCATAGAAACTAATTTAAACAGTCACATAGTTGATCCTCTACCACATGAAAAAGCAAATGAAATTTCTCTCAGAAAGATGCAGACAAATATGATAAACCCTACTCTTGAAGGATCATATTTTCCAAGCATACCACAGGAATTTATTTGTCCACTGACAAGAAAGATCTTCGAGGAACCAGTCACCTTAGAATCTGGTCAAACCTTTGAAAGAAAAGCCATCAAGGCATGGTTTCAAAAAGGAAACAGAACATGTCCAGTAACAGGAAATAGTTTAGAGTGTGTTTTCATGCCATTTACCAACCTTATTTTGAAGCGTTTGATCGATAACTGGAAGTCAGAAGATTTTGATCGCCTTCTTGATTTCGCCTCTCAAACCGTGGAAAATTCAGAGGAACTTAAGTTGAAAAAGCATGACGAGGCTACCGTTTTCAAGTTACAAAGTCTTTTCTCTTCCTTGAAAGAAGAGGAAAAATCAAGTTATGCGAAGCATATAATCTCTCTAGGAGTTTTTTCATTTCTTTTTAGGAGATTTGAACTGGGAAATATGGAAGAAAAATCACTTGTTTTGGAGATCTTGTTAAATTGTATTCAAGCAGACTCAAGTTGCATATACAAGATAGCTAGAAGTGTCAACAGAAAATTTCTTCTCGAGCTTCTTCATAGCAAGGAGATTACACCTAGAACAAACGCATTTCTCTTCCTTACTGAACTTTTGTCAATGAAGAGGAGAAAGGATGTTACTTCTTTCATAAGTGGTTTGGTGAGTGAAGATGTATTTAGTACAATGGATATTGTGCTCATGTATCTCAAGAATTCTTCTCCAATTGAAAAGCCTCTCATTGCTGTTCTCTTATTACACTTTGATCTACCGGTTGAGCAGCATCAAAAGATTAGCATATACATAGAGAATGCCGTGAATGCCATTGCAGAGGCACTGGATGCCAGCTTAAATGACGGGAATGTCCAAAAGAAGTGTTGCAGAGCTCTATTAATCTTGTGTGGCCATTTTTCTTCCACTGGAAAGATACCAACCAAGACTACCATCTTAAAGCAAGCAGGTTATAATAATGGTATCTCAGAATTGAAATCCCCTAGCCATGATGAAGAGGATCAACGTTTCGATATAACCATTTCATCGGAAGATGATGAAGAAGAAGAAGAAAGGCATGAAGAGTTCATGATGAACTTGTTAGAAACATTGGTTGGTGATGGAGAAAGTCCATTTTTGAAGAGCATATCTAGATGTTTAGATTCTACACATGTAGATTTAGTGAGGGCTAGTCTAATAACTGTTACATGGTTGAGTTCCTCACTTTCTAAACAATATAATGCTGGATTGCATCTTCCTGCATTCTTAGCTATCATCTCTCAGCTTAAAGGAATCCTGCAAAATGGAGAACTTGAGCTCAAAACTCTTGCATCTATGTCCTTGTTTAACTTCAGTAAAATATCAGAATGCAGAACACTTTTGAAGATTATGGCAGAAGATATTGCTCCTCTTCTTCATGGACTAGTTGATGTAATATGGACTGCTAAGAAACTTCATGCCATTTTGTGTAGGGAGAATCTCTAG 3240 0.363 MASSLEDLLREEGFKGSSKRVQRSRSSFHHGASSDPLHSLEERLCVSSSERIKTQKTKSKAASRYQINNTRDNKNTRSRDNNNVFIGNEINHGLLKNDESEKNKSYNSSESDSGFEDVYSDQVSDVKRGKDKYFKEKLVEKPIKDSYMLRQLSGNRKNIKYQKNSQTISNSNSKSFENSRNKNSHQLQADSSLAIDEIAVKALVSILNGYTESFLKDEDFRSALRHNCFSSLNFIQLEEEENNSETKVITSLEQAIDCIEKTACEEEPKSATNLKRATMQLSIIAGLSLNDLKHDLTCGIPNFKLSACAHLYLSVVYMIQIKNKVSAKHLLQVFCDSPFQARTILLPELWERLFSPQFSHLKKWYNNKEGEIVVDTPSRKPRKLKILQKVYNENLDSGTQIFALYYKDWLSEGVETPTIPSIGIPSFSVTSRQGSSFAHSFESASSNEPFSPQAMVSKKLYDSFFGGYSKPQVYVVDEDKDEDSYENCERGSYGSTVVKKTVIYESETVKFIDQSDEDFTPSVPVHAFHPQKGTSRTAAEEWKEKNSRNATRKYFSIETNLNSHIVDPLPHEKANEISLRKMQTNMINPTLEGSYFPSIPQEFICPLTRKIFEEPVTLESGQTFERKAIKAWFQKGNRTCPVTGNSLECVFMPFTNLILKRLIDNWKSEDFDRLLDFASQTVENSEELKLKKHDEATVFKLQSLFSSLKEEEKSSYAKHIISLGVFSFLFRRFELGNMEEKSLVLEILLNCIQADSSCIYKIARSVNRKFLLELLHSKEITPRTNAFLFLTELLSMKRRKDVTSFISGLVSEDVFSTMDIVLMYLKNSSPIEKPLIAVLLLHFDLPVEQHQKISIYIENAVNAIAEALDASLNDGNVQKKCCRALLILCGHFSSTGKIPTKTTILKQAGYNNGISELKSPSHDEEDQRFDITISSEDDEEEEERHEEFMMNLLETLVGDGESPFLKSISRCLDSTHVDLVRASLITVTWLSSSLSKQYNAGLHLPAFLAIISQLKGILQNGELELKTLASMSLFNFSKISECRTLLKIMAEDIAPLLHGLVDVIWTAKKLHAILCRENL* 1080
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g3280 1079 ProSiteProfiles U-box domain profile. 598 673 IPR003613 GO:0004842|GO:0016567
Tpr6g3280 1079 CDD RING-Ubox_PUB 603 644 IPR045210 -
Tpr6g3280 1079 MobiDBLite consensus disorder prediction 1 84 - -
Tpr6g3280 1079 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 598 671 IPR013083 -
Tpr6g3280 1079 SMART Ubox_2 602 666 IPR003613 GO:0004842|GO:0016567
Tpr6g3280 1079 Coils Coil 235 255 - -
Tpr6g3280 1079 SUPERFAMILY ARM repeat 711 1061 IPR016024 -
Tpr6g3280 1079 SUPERFAMILY RING/U-box 594 669 - -
Tpr6g3280 1079 PANTHER OS04G0584500 PROTEIN 1 1077 - -
Tpr6g3280 1079 Gene3D - 688 1073 IPR011989 -
Tpr6g3280 1079 MobiDBLite consensus disorder prediction 96 121 - -
Tpr6g3280 1079 Pfam U-box domain 599 669 IPR003613 GO:0004842|GO:0016567
Tpr6g3280 1079 MobiDBLite consensus disorder prediction 154 188 - -
Tpr6g3280 1079 PANTHER OS04G0584500 PROTEIN 1 1077 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g3280 Tpr-Chr6 35395498 35401899 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g3280 586 715 U-box Gene Family AT5G42340 32.308 6.40e-13 71.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g3280 - - ccaj:109801846 1330.08