Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g3277 ATGGCATCAACATGTTTTGTCAACAAGAATGAATTTCCTATGAAAGTGGTAGCTCCCATCTCTCATTTGTATCCTGAACCTCTTGCAAAATATGACGATGTTGTGGCAAATCCCAAGCTCTTCATGCTTACATTGGAGAAACTTCATGCTTCTATGGGAACCAAGTTCATGATTCCGATTATTGGAGGAAAGGAACTAGATTTGTGTCGACTATTCGTTGAAGTGACTTCTCGTGGAGGGATTGAGAAGCTTATGAAAGAGAGAAGATGGAAGGAAGTAACAGCAACTTTCAATTTTCCATCAACAGCGACAAATGCTTCATTTGTGCTTAGAAAATATTATGCTTCATTACTTTATCACTATGAACAAATATACTATTTTAGAGTCAATCGATGGACGCCTGCATCTTATGATGTTTGGCAAAATCAACCAACCATGTCAACTTCTGCTTCAATTGCACAATTTTTGCAGCCTTCTTCGGCAACACAACCAATTGACTTTCAAAAGTCAATGATTCGTGCTTCTGAATTGCCTCAAGTGTCTTTTTCAAGACCTTCACTTGTTGGAGTTATTGATGGAAAATTTGAAAATGGATATTTAATTTCAGTTTCATTAGGTTCAGAGACACTTAAAGGTGTACTATATGAGTCTCCACAGTACATTATGATTAATAATAACAATATTGCTTCTGCTGCATTGGGGGTCCAACGCCGCCGTCGCAGAAGGAAGAAGTCAGAAATAAAAAGGAGAGATCCTGCTCATCCAAAACCCAACAAAAGTGGTTACAATTTTTTCTTTGCTGAGCAACATGCAAGACTAAAGCTACTAAACCAAACCATGGACAAAGATATTAGTAGAATGATTGGTGAACTATGGAACAACTTAAAAGAGTCTGAAAAAACAGTTTATCAAGAAAAAGCCATTAAGGATAAAGAGAGGTACCAAGCAGAAATGGAAGATTATCGCGAAAGATTGAAAACATGTACTACAATTGACGACACAGTGCCTCTCCAACAACGGTTTCCGGAAGCAAATTCAGCTTTGGTGGATGTTGACATGAAAATGTTTGATTCATTTCAAACTCCTGAGGAGAGTTTTTCTAGTGGAAGTGATTATGTTGTAGATGATGTCAACATGGATGCTTCCTCAAGTGGAGCAAAAGTTGACTCTGAAACTTTTATGCATTCAGAAAAACCAACTAAGGAAGGAGTTATTGAACTTCTTAGCCATTGTGAGGTGGAAAAAAAGGATGCCGGAGGATTTCAACATACTCAAAAGAAGAGCGAGGGTCAAAACATGTTAACCTTACTTTAA 1314 0.376 MASTCFVNKNEFPMKVVAPISHLYPEPLAKYDDVVANPKLFMLTLEKLHASMGTKFMIPIIGGKELDLCRLFVEVTSRGGIEKLMKERRWKEVTATFNFPSTATNASFVLRKYYASLLYHYEQIYYFRVNRWTPASYDVWQNQPTMSTSASIAQFLQPSSATQPIDFQKSMIRASELPQVSFSRPSLVGVIDGKFENGYLISVSLGSETLKGVLYESPQYIMINNNNIASAALGVQRRRRRRKKSEIKRRDPAHPKPNKSGYNFFFAEQHARLKLLNQTMDKDISRMIGELWNNLKESEKTVYQEKAIKDKERYQAEMEDYRERLKTCTTIDDTVPLQQRFPEANSALVDVDMKMFDSFQTPEESFSSGSDYVVDDVNMDASSSGAKVDSETFMHSEKPTKEGVIELLSHCEVEKKDAGGFQHTQKKSEGQNMLTLL* 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g3277 437 SMART bright_3 36 127 IPR001606 GO:0003677
Tpr6g3277 437 Gene3D High mobility group box domain 239 333 IPR036910 -
Tpr6g3277 437 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 255 322 IPR009071 -
Tpr6g3277 437 CDD HMGB-UBF_HMG-box 255 319 - -
Tpr6g3277 437 SMART ARID_2 32 122 - -
Tpr6g3277 437 MobiDBLite consensus disorder prediction 418 437 - -
Tpr6g3277 437 SMART hmgende2 254 323 IPR009071 -
Tpr6g3277 437 MobiDBLite consensus disorder prediction 235 249 - -
Tpr6g3277 437 ProSiteProfiles ARID domain profile. 35 126 IPR001606 GO:0003677
Tpr6g3277 437 Pfam HMG (high mobility group) box 255 322 IPR009071 -
Tpr6g3277 437 PANTHER HIGH MOBILITY GROUP B PROTEIN 15 13 382 - -
Tpr6g3277 437 SUPERFAMILY HMG-box 243 326 IPR036910 -
Tpr6g3277 437 Coils Coil 304 331 - -
Tpr6g3277 437 CDD ARID_HMGB9-like 37 122 IPR045303 GO:0003677
Tpr6g3277 437 Gene3D - 28 133 IPR036431 GO:0003677
Tpr6g3277 437 Pfam ARID/BRIGHT DNA binding domain 39 122 IPR001606 GO:0003677
Tpr6g3277 437 SUPERFAMILY ARID-like 34 128 IPR036431 GO:0003677
Tpr6g3277 437 MobiDBLite consensus disorder prediction 234 261 - -
Tpr6g3277 437 PRINTS High mobility group (HMG1/HMG2) protein signature 287 306 - -
Tpr6g3277 437 PRINTS High mobility group (HMG1/HMG2) protein signature 306 326 - -
Tpr6g3277 437 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 13 382 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g3277 Tpr-Chr6 35362353 35366923 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g3277 1 355 ARID Transcription Factor Family AT1G04880 53.846 3.35e-119 353
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Tpr6g3277 ARID 8.5e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g3277 - - mtr:MTR_7g005970 707.597