Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g3263 ATGGGTTCTGAGAATGTGCCCAAATCAAGTGAACTCTTTCAAGCTCAAGCTCACTTGTATGATCACATCCTTAGTTTCTTGAAACCCATGTCCATCAAGTGGGCAGTTGAATTCAACATACCAGATATCATCCACAATCACGGCCGACCCATTACGCTTCCTCAGCTTGTCTCTGCACTTCAAATTCCGGAACAAAAAACCGCTTGTGTTCGGAGCCTCATGCGTTTATTGACGCACAATAAGTTTTTTATAATTGTGATTGCGGACGAGAAAGAAGCATATGATCTTTCTCCAGCATCAGAGCTCCTTGTTAAAGGAACTGATCATTGTTTAACTTCGATGGTTCGGTTGTTAACAAATCCAACTCTTGTTGATTTATATAATCATTTAAGTAAATGGACTTCTGGAGAGAAACTCACAATTTATGACACGACATTAGGCAAAGATGACTATTGGAGTTTTATTCATCAAAATCCATTACATTTGAAGTATTTCAATGATGCTATGGAAAGCGATTCTCGTGTTGTGAGGTTGGCACTAAGAGATTGCAAATCGGTTTTTGACGGTTTGGTTTCTCTGGTAGATGTTGGAGGTGGAACCGGAAACACTGCTAAAATTATTTGTGAAACATTTCCTATGTTAAAATGCATAGTATTAGACCTTCCACAAGTGGTAGCTGATTTACCAGGAAATGGAAATTTGAGTTTTATGGGTGGAAACATGTTCCATTCTATCCCTCAAACTGATGCAATTTTATTAAAGTGGATTTTGCATGATTGGAATGATGAAGACTGTGTCAAGATACTTAAAAATTGCAAAGAAGCTGTTTCAAGAAATGAGAAAGGAGGAAAAATCATCATCATAGATATTGTGATAAATGAAAAGCAAGATGAACATGAAATGACAGAAGTCAAGCTCTTCTTTGACATAGTTATGATGGCTAGTTTTAATGCAAAAGAAAGGGATGAAGAAAACTGGAAGAAAATCTTCAGTGAAGCAGGGTTCACACGTTACAAAATATTTCCCATATTTGGTTTTAGATCACTTATTGAACTTTATGTTTAA 1065 0.3653 MGSENVPKSSELFQAQAHLYDHILSFLKPMSIKWAVEFNIPDIIHNHGRPITLPQLVSALQIPEQKTACVRSLMRLLTHNKFFIIVIADEKEAYDLSPASELLVKGTDHCLTSMVRLLTNPTLVDLYNHLSKWTSGEKLTIYDTTLGKDDYWSFIHQNPLHLKYFNDAMESDSRVVRLALRDCKSVFDGLVSLVDVGGGTGNTAKIICETFPMLKCIVLDLPQVVADLPGNGNLSFMGGNMFHSIPQTDAILLKWILHDWNDEDCVKILKNCKEAVSRNEKGGKIIIIDIVINEKQDEHEMTEVKLFFDIVMMASFNAKERDEENWKKIFSEAGFTRYKIFPIFGFRSLIELYV* 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g3263 354 Pfam Dimerisation domain 30 78 IPR012967 GO:0046983
Tpr6g3263 354 PIRSF O-mtase 1 354 IPR016461 GO:0008168
Tpr6g3263 354 SUPERFAMILY "Winged helix" DNA-binding domain 9 107 IPR036390 -
Tpr6g3263 354 Pfam O-methyltransferase domain 127 335 IPR001077 GO:0008171
Tpr6g3263 354 Gene3D - 2 103 IPR036388 -
Tpr6g3263 354 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 20 354 IPR016461 GO:0008168
Tpr6g3263 354 PANTHER O-METHYLTRANSFERASE 5 353 IPR016461 GO:0008168
Tpr6g3263 354 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 109 352 IPR029063 -
Tpr6g3263 354 Gene3D Vaccinia Virus protein VP39 104 353 IPR029063 -
Tpr6g3263 354 PANTHER FLAVONOID 4'-O-METHYLTRANSFERASE 5 353 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g3263 Tpr-Chr6 35245221 35246658 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g3263 29 352 Monolignol Biosynthesis Gene Families AT5G54160 31.845 2.41e-46 160
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g3263 K22588 K13262 gmx:100813225 391.734