Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g3250 ATGGAGTTCTTGGTTGAAGCTGTGGGAAGCATAAACGACTGTTTCGTATCCCTTCCCTTACCTCTAATTCAAACCCTTCAATCCACAGCTTCATCTCCTCTTCCTCCAATTCTCGTCCTCCAGCTTGGTTCTCCATCCCACCCTCCTCACTGCTGGTTTGTTGCTTGGTCTGGTGCCAGTTCTTCCTCTTCAGCCATACAAGTTTCTCAACAATTTGCCGAATGTGTTTCCTTGCCGATTCATTCTCCAGTTCAAGTTAAAGTTGCTTCTAATGTTCCTCATGCTTCTTCCGTCTATATAGAGCCACATACGGTAGATGATTGGGAAATTTTGGAACTTAATTCCCAACAAGCTGAGGATCAAATTCTCAATCAGGTTAGGATTGTTCATGAAGGGATGAGGTTTCCTTTATGGTTGAATGGTCACACTGTCATCACATTTCATGTTGGTTCTGTTTTTCCCAAGAATGCGGTGGTACAACTCATGCCAGGAACTGAAGTTGAGGTTGCTTCAAAGACGCGCAAAAGAATTTCGGATTCAGCGGGAGATTCACATGTAGGTTCCAATAGTAAAGATCATACTGCAAAAATGCTGCTCCGTTTACAAGAGCCAAATGATTTATGTCGTACCAGTACTCATGTCAAAGGTGTTGAGCTTCATGTAGGGCTCACTTCGGTTGCTGTTGTTCATCCAGAAACAGCCAAGCGCTTCTCATTTAACACGCTTCAGTTGGTTTCCATAGTGCCAAGAGTATCAAAAGAGAATGTTAATAATTCCAGAACCAAATCCAATATTATGAAAGCCAAAGGTGGTTCAGCTGTTAATGAAGTTGAGAATGGAAATACTGACAAGAAGGAACATCGACAAGCAGTTGTTCATCTGTTGATTTCAGAATCTGTGGCTAAAGGACATGTAATGCTAGCTAAGTCTCTTCGCCTTTATTTGAGAGCTAGCCTGCATTCATGGGTTTATTTGAAGGCATGCGATATTATTTTGGAAAAAACTATCCCTTCCATTTCTCTTTGTCCTTGTCGATTCAAACTGGTAAGGCAGGAGAATTCCGTTGAGAACAATGGTCTAGATGATTTTCACAGCCATAAGAATCACATTGATGAAACATTGCATGGGAAAGCCACTTCAGGTGTCTTTTTGGATACCAGAAATTGGTTAATGCACAGTGAAGTTGTTGCGGCTCTTTTTGATAATCCCAGTTACAGAGAAGAGGAAGAGGTTGCAAACCAATCCCAGAATCAAAAGGGATTACAAAGTCTTGTACGACTATGGTATATTGCACAACTTGAGGCAATTACTTCCATTATGGGGATGGAACTTAATTCATTGGTTATTGGTAGTAAAACATTGCTTCATTTTGGATTAAGCTGTTACCAGATTGGGAGTGATGAGAAGTTTCAGCCGACTTCTTCAGAACACGGTGGCAAGGAAGCTGAAATGTTATTTTTATTGACCTTTGGTGAAGAAGATCTGCATCATGGAAAACTTAATGCATATGAAGTTTCACTTGGCGGAAGACTCAATAACATCAACGTTGAGGATCTGAAGTTTTTTGAAAGAATGAAATTGGGTGATCCCATTTCTATTCATTCTTTTGACGAGAGAACCTCTGCAGACCACATTCGTTCAAATGTACCTTTCCATGGCTGGATGGAGAAAACTGCTTCTGATGTTATCAATAGGATGCTGGTATTGTTATCTTCAACATGTGGTTTGTGGTTTGGCTCATGCAACCTGCCACTTCCTGGACATGTTGTAATATATGGACCTCCGGGCTCTGGGAAAACTATACTAGCAACTGATGTGGCAAAATCCCTTGAAAATCATGAAGACATCTTAGCGCACATAATTTTTGTTTCCTGCTCAAAACTTGCTCTGGAGAAGGTCCCAGTTATTCGTCAAGAACTTGCAAACCATATAACTGAAGCTATAAACCATGCACCTTCTGTTGTCATCTTTGACAATCTTGATAGTATAATTTCTACCCCTGATTCCGAAGGTTCTCAGCCATCGATGTCTGTTGCTGGACTCACAGATTTTCTAGTTGACATCATGGATGAATATGGGGAGAAGAGGCGAAAGTCATGTGGATTTGGTCCAATAGCTTTCATAGCTACCATACAGTCCCTAGAGAGTATACCACAATCTTTGAGCTCTTCAGGGCGGTTTGACTTTCACATTAAGCTGCCTGCTCCTGCAGCTTCCGAGCGCAAAGCTATGTTGAAGCATGTAATACAAAGGCGACACTTGCAATGCAATGATGACATCCTGCTTGATGTGGCTGTAAAATGTGATGGTTATGATGGCTATGATCTGGAAATTTTAGTTGATAGAACTGTCCATGCTGCTGTTCGCCGTTTTCTGCCATCTAAACCCATTTATGAGCATGAGGGTCCTGCTTTACTCCAGGAGGATTTCTCTCAGGCAATGCATGATTTTCTCCCAGTTGCAATGCGTGACATCACAAAATCTGTTTCTGACGATGGCCGTTCTGGATGGGATGATGTCGGTGGTCTTGCTGATATTCGAAATGCTATTAAAGAGATGATCGAGTTGCCATCAAAGTTTCCAAAAACTTTTGCGCAAGCACCATTAAGGTTGCGGTCAAATATCCTCTTATATGGTCCTCCCGGTTGTGGCAAAACTCACATAGTCGGTGCTGCTGCCACTGCTTCTTCGCTTCGATTCATATCAGTGAAAGGGCCAGAACTGTTAAACAAATACATTGGTGCTTCTGAACAAGCTGTTAGGGATATATTTTCTAAAGCAGCTGCTGCAGCCCCGTGCCTACTTTTTTTTGATGAATTTGATTCTATTGCTCCTAAGAGAGGGCACGACAATACTGGAGTAACCGACCGTGTTGTCAATCAATTCTTGACCGAGTTAGACGGTGTTGAGATTTTAGCTGGTGTATTTGTGTTTGCTGCAACCAGTAGACCAGATTTACTGGATGCGGCACTGTTGAGACCGGGTAGGTTAGATCGTCTTCTATTTTGTGACTTTCCATCTTGGCATGAGAGATTGGAAATTCTTACGGTACTTTCTAGAAAGTTACCAATGGCCAGTGATATTGATTTGGCTACAGTAGCTAATATGACTGAGGGATTCAGTGGAGCTGATCTCCAGGCTCTCCTCTCAGATGCACAGCTTGCAGCAGTTCATGATATTCTGGACAACATTGATACGTTTGGGTCAGAGAAAACACCAGTTATTACTGATGCTCTTCTAAAGCTCACTGCATCCAAGACCAGGCCATCTATTTCAGAGGAAGAGAAAAGACGACTCTACAGTATTTATCACCAGTTCCTGGATTCAAAGAGATCTGTTGCTGCCCAGTCAAGGGATGTAAAAGGCAAGAAGGCAACTCTAGCCTGA 3387 0.4216 MEFLVEAVGSINDCFVSLPLPLIQTLQSTASSPLPPILVLQLGSPSHPPHCWFVAWSGASSSSSAIQVSQQFAECVSLPIHSPVQVKVASNVPHASSVYIEPHTVDDWEILELNSQQAEDQILNQVRIVHEGMRFPLWLNGHTVITFHVGSVFPKNAVVQLMPGTEVEVASKTRKRISDSAGDSHVGSNSKDHTAKMLLRLQEPNDLCRTSTHVKGVELHVGLTSVAVVHPETAKRFSFNTLQLVSIVPRVSKENVNNSRTKSNIMKAKGGSAVNEVENGNTDKKEHRQAVVHLLISESVAKGHVMLAKSLRLYLRASLHSWVYLKACDIILEKTIPSISLCPCRFKLVRQENSVENNGLDDFHSHKNHIDETLHGKATSGVFLDTRNWLMHSEVVAALFDNPSYREEEEVANQSQNQKGLQSLVRLWYIAQLEAITSIMGMELNSLVIGSKTLLHFGLSCYQIGSDEKFQPTSSEHGGKEAEMLFLLTFGEEDLHHGKLNAYEVSLGGRLNNINVEDLKFFERMKLGDPISIHSFDERTSADHIRSNVPFHGWMEKTASDVINRMLVLLSSTCGLWFGSCNLPLPGHVVIYGPPGSGKTILATDVAKSLENHEDILAHIIFVSCSKLALEKVPVIRQELANHITEAINHAPSVVIFDNLDSIISTPDSEGSQPSMSVAGLTDFLVDIMDEYGEKRRKSCGFGPIAFIATIQSLESIPQSLSSSGRFDFHIKLPAPAASERKAMLKHVIQRRHLQCNDDILLDVAVKCDGYDGYDLEILVDRTVHAAVRRFLPSKPIYEHEGPALLQEDFSQAMHDFLPVAMRDITKSVSDDGRSGWDDVGGLADIRNAIKEMIELPSKFPKTFAQAPLRLRSNILLYGPPGCGKTHIVGAAATASSLRFISVKGPELLNKYIGASEQAVRDIFSKAAAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEILAGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSWHERLEILTVLSRKLPMASDIDLATVANMTEGFSGADLQALLSDAQLAAVHDILDNIDTFGSEKTPVITDALLKLTASKTRPSISEEEKRRLYSIYHQFLDSKRSVAAQSRDVKGKKATLA* 1129
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g3250 1128 Gene3D - 92 173 - -
Tpr6g3250 1128 Gene3D - 836 1097 IPR027417 -
Tpr6g3250 1128 ProSitePatterns AAA-protein family signature. 975 993 IPR003960 GO:0005524|GO:0016887
Tpr6g3250 1128 PANTHER - 5 1125 - -
Tpr6g3250 1128 Pfam Peroxisome biogenesis factor 1, N-terminal 97 170 IPR015342 GO:0005524|GO:0005777|GO:0007031
Tpr6g3250 1128 CDD AAA 583 734 - -
Tpr6g3250 1128 CDD AAA 841 1004 - -
Tpr6g3250 1128 SUPERFAMILY Cdc48 domain 2-like 93 170 IPR029067 -
Tpr6g3250 1128 Pfam ATPase family associated with various cellular activities (AAA) 875 1002 IPR003959 GO:0005524|GO:0016887
Tpr6g3250 1128 Pfam ATPase family associated with various cellular activities (AAA) 589 734 IPR003959 GO:0005524|GO:0016887
Tpr6g3250 1128 PANTHER AAA-FAMILY ATPASE 5 1125 - -
Tpr6g3250 1128 Gene3D - 737 829 - -
Tpr6g3250 1128 Gene3D - 553 736 IPR027417 -
Tpr6g3250 1128 Pfam AAA+ lid domain 1027 1064 IPR041569 -
Tpr6g3250 1128 Gene3D - 1006 1085 - -
Tpr6g3250 1128 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 837 1099 IPR027417 -
Tpr6g3250 1128 SMART AAA_5 871 1007 IPR003593 -
Tpr6g3250 1128 SMART AAA_5 585 737 IPR003593 -
Tpr6g3250 1128 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 572 814 IPR027417 -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Tpr6g3250 Tpr-Chr6 35094600 35108156 Dispersed/Transposed
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g3250 586 792 Calmodulin-binding Proteins AT3G56690 28.708 6.75e-12 68.2
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g3250 K13338 - gmx:100803882 1804.65