Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g3235 ATGCCAATTTTGAACTGGTTTTGTCAATGCAAGTTAGTGTTGTGGCGTTTAAGAACAAGAAACTACCACAGACACAAACACCATTCTCAGTTCTCTTTGTATGTCTTGGAAACATCTGTAGAAGTCCAGCTGCTGAAGGGGTTTTCACTTATTTCGTTAAGAAAAGAGGTTTTGATTCTAAAATCAGAATTGATTCTGCTGGGTAATCAAACTGATTCAAGAATGAGGGCAGCTTCAAAAAGATGTGGGATTGAGATAACTTCAATTTCAAGGCCAATTAAGTCATCTGATTTTGTTGAGTTTGATCTTATTCTTGCTATGGACAAGCAAAATAGAGAGAGAGGATATATGGAAGCTTTTAATAGATGGAAGTTTAGAGATCCTTTACCTGAAGATGCCCACAAAAAGGTTAGGTTGATCTGCTCATATTGTAAGAAACATGATGAAACTGAAGTCCCGGATCCTTGCTATGGTGGACCTGAAGGTTTTAAGAAGGTGTTAGATATGCTTGAAGATGCTTGTGAATCATTGCTAGAAAACATTTTGGCAGAAAATAAACATATACAAGAATCCTAA 576 0.3646 MPILNWFCQCKLVLWRLRTRNYHRHKHHSQFSLYVLETSVEVQLLKGFSLISLRKEVLILKSELILLGNQTDSRMRAASKRCGIEITSISRPIKSSDFVEFDLILAMDKQNRERGYMEAFNRWKFRDPLPEDAHKKVRLICSYCKKHDETEVPDPCYGGPEGFKKVLDMLEDACESLLENILAENKHIQES* 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g3235 191 SMART LMWPc_2 55 180 IPR023485 -
Tpr6g3235 191 Pfam Low molecular weight phosphotyrosine protein phosphatase 67 178 IPR023485 -
Tpr6g3235 191 SUPERFAMILY Phosphotyrosine protein phosphatases I 67 181 IPR036196 -
Tpr6g3235 191 Gene3D - 63 190 - -
Tpr6g3235 191 PANTHER LOW MOLECULAR WEIGHT PHOSPHOTYROSINE PROTEIN PHOSPHATASE-RELATED 68 186 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g3235 Tpr-Chr6 34950586 34955753 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g3235 68 185 Protein tyrosine phosphatase (PTP) family AT3G44620 55.319 9.07e-46 150
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g3235 K25307 - tcc:18590368 202.986