Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g3209 ATGAGCCGTAGAGTGAGGAGGAAAGTGGCAAGGAAAGGAAAAGGGAATGTGGTTTCGAGTTTCCCTGAAATTGAAGACGTGGTTGCGGATTTGGAGCCCCAAGGCGTTGTTGATTGGAGGAGTTTACCTGATGATACAGTAATTCAGCTATTGTCATGTCTGAGTTATCGAGACCGAGCTAGTTTATCAGCAAGTTGTAAGACATGGAGGGTTCTTGGTAACTCCCCGTGTTTGTGGACTTCTTTGGATCTCCGTTCGCACAAGTTTGATGCCAATGTTGCATCTTCACTTGCTTCTAGATGTGTGCATCTTCAGAAGCTTAGGTTTCGTGGTGTGGAGGCTGCTGAGGCACTACTTCATCTTCGAGCTAAGAACTTGCGCGAATTAAGCGGTGACGGTTGTAGGAAGATGACCGATGCAACTCTTGCTGTGATTGCAGCCCGGCATGAGTCACTTCAGAGTCTTCAGCTTGGACCAGATTTTTGTGACAAAGTTACTAGTGATGCTATAAAAGCAATAGCTCACTGCTGTCCTAGTTTGAATAAACTCAGGCTCTCAGGCATTAGGGATGTAAATGCTGATGCTATTAATGCATTGGCTACCTATTGTCCAAAATTGACTGATCTCGGGTTCATCGACTGCCTGAGTGTTGACGAGCTTGCATTGGGAAATGTGCAATCGATTCGTTTCCTTTCTGTTGCGGGGACACCAAGTATGAAGTGGAGTGTGGTTTCACATCTTTGGCATAAGCTTCCGAACCTGATTGGATTAGATGTTTCAAGAACTGATATTGGTCCAGCTGCTGTTTCTAGATTGTTATCCTTATCACCAAATTTGAAGATTTTGATTGCTTTGAATTGTCCTATGCTCGAAGAAGAGACTAGCTTTTCTGCTAGTAAATATAAAAACAAGTTGTTGATTTCCCTATCAACAGATATTTTTAAAGGACTAGGTTCTTTATTTTTCGATAATACAAATAAAGGAAAGAATGTGTTTTTGGACTGGAGGAATTCAAAGAGTAATGATGATAAGGGCCTTGATGAAATTATACCTTGGCTTGAATGGATGCTATCACATATACTTTTGCGTTCTGCTGAGAGCCCTCAACAAGGAGGTCTTGATAATTTCTGGGTTGAACAAGGTGCGTCACTTTTGCTTAGTCTAATGCAGAGTTCTCAAGAGGATGTTCAGGAGAGGGCAGCCACAGGCCTTGCAACTTTTGTTGTAATTGATGATGAAAATGCTAGCATCGATTGTGGAAGAGCTGAAGCAGTTATGCGAGATGGTGGTATACGCCTCCTTCTTGGCCTTGCAAAATCATACAGGGAAGGGCTTCAGTCTGAGGCAGCCAAGGCTATTGCGAATTTGTCTGTGAATGCCAATGTGGCGAAGGCGGTTGCAGAAGAGGGTGGGATTGAGATTCTCGCTAGTTTGGCTAGGTCAATGAACAAACTGGTGGCTGAAGAAGCTGCTGGAGGATTATGGAATCTCTCTGTTGGAGAAGAGCACAAGGGTGCCATTGCTGAAGCTGGTGGAGTACAAGCGTTAGTGGATCTTATATTCAAGTGGTCCTCTACTGGAGATGGAGTTTTGGAACGTGCAGCTGGTGCATTGGCTAATTTGGCTGCTGACGACAAGTGTAGTACAGAGGTTGCACTAGCAGGAGGCGTACATGCTCTAGTGATGCTTGCGCGTAACTGTAAATACGAGGGAGTGCAAGAGCAGGCTGCTCGTGCATTGGCTAATTTAGCTGCTCATGGAGATAGCAACAGTAACAATGCTGCTGTCGGACAAGAAGCGGGTGCTCTTGAGGCTCTTGTTCAACTTACACGTTCTCCTCATGAGGGTGTCAGGCAAGAAGCTGCTGGTGCACTTTGGAATTTGTCATTTGACGATAGAAATCGAGAGGCCATTGCAGCAGCTGGCGGAGTTCAAGCTTTGGTTGCTCTTGCCCAATCTTGTTCTAATGCTTCCCCTGGACTTCAAGAGAGGGCTGCTGGCGCTCTATGGGGATTGTCAGTTTCTGAAGCCAATAGCATTGCCATTGGACGGGAAGGGGGAGTTGCACCTCTGATTGCACTTGCACGGTCCGAAGCAGAGGATGTTCATGAAACGGCTGCAGGAGCACTATGGAATCTTGCTTTCAACCCTGGTAATGCTTTACGAATAGTGGAGGAAGGTGGAGTAGCTGCACTTGTTGATCTCTGTTCTTCATCAGTGTCAAAAATGGCACGGTTTATGGCGGCATTGGCTTTGGCCTACATGTTTGATGGGAGAATGGATGAATTCGCTTTAGTAGGCACCATGTCAGAAAGTGTTTCTAAGAGCGTGGGCCTGGATGGAGCCAGAAGGATGGCTCTGAAACACATTGAAACATTCGTCCGCATGTTTTCTAATCAACAAGCATTTGCGGCTGCTGCTGCGTCATCGGCTCCTGCAGCACTAGCACAGGTTACTGAAAGTGCCCGTATTCAAGAAGCGGGACATCTTAGGTGCAGTGGTGCTGAAGTTGGAAGATTTGTTACTATGCTACGAAATCCGTCGTCAATACTCAAAGCTTGTGCAGCATTTGCTCTTCTACAGTTTACAATTCCAGGTGGACGACATGCTACACACCATGCCAGCCTCATGCAGAACGCAGGTGCAGCAAGAGTTCTACGCAGTGCAGCCGCCGCAGCAACCGCGCCTCTTGAAGCAAAAATCTTTGCCAAGATTGTTCTTCGTAATCTCGAGTATCACCACCTAGAGCATACTGTTTAG 2760 0.4612 MSRRVRRKVARKGKGNVVSSFPEIEDVVADLEPQGVVDWRSLPDDTVIQLLSCLSYRDRASLSASCKTWRVLGNSPCLWTSLDLRSHKFDANVASSLASRCVHLQKLRFRGVEAAEALLHLRAKNLRELSGDGCRKMTDATLAVIAARHESLQSLQLGPDFCDKVTSDAIKAIAHCCPSLNKLRLSGIRDVNADAINALATYCPKLTDLGFIDCLSVDELALGNVQSIRFLSVAGTPSMKWSVVSHLWHKLPNLIGLDVSRTDIGPAAVSRLLSLSPNLKILIALNCPMLEEETSFSASKYKNKLLISLSTDIFKGLGSLFFDNTNKGKNVFLDWRNSKSNDDKGLDEIIPWLEWMLSHILLRSAESPQQGGLDNFWVEQGASLLLSLMQSSQEDVQERAATGLATFVVIDDENASIDCGRAEAVMRDGGIRLLLGLAKSYREGLQSEAAKAIANLSVNANVAKAVAEEGGIEILASLARSMNKLVAEEAAGGLWNLSVGEEHKGAIAEAGGVQALVDLIFKWSSTGDGVLERAAGALANLAADDKCSTEVALAGGVHALVMLARNCKYEGVQEQAARALANLAAHGDSNSNNAAVGQEAGALEALVQLTRSPHEGVRQEAAGALWNLSFDDRNREAIAAAGGVQALVALAQSCSNASPGLQERAAGALWGLSVSEANSIAIGREGGVAPLIALARSEAEDVHETAAGALWNLAFNPGNALRIVEEGGVAALVDLCSSSVSKMARFMAALALAYMFDGRMDEFALVGTMSESVSKSVGLDGARRMALKHIETFVRMFSNQQAFAAAAASSAPAALAQVTESARIQEAGHLRCSGAEVGRFVTMLRNPSSILKACAAFALLQFTIPGGRHATHHASLMQNAGAARVLRSAAAAATAPLEAKIFAKIVLRNLEYHHLEHTV* 920
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g3209 919 SUPERFAMILY ARM repeat 376 745 IPR016024 -
Tpr6g3209 919 SMART fbox_2 42 82 IPR001810 GO:0005515
Tpr6g3209 919 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 642 687 IPR000225 GO:0005515
Tpr6g3209 919 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 601 643 IPR000225 GO:0005515
Tpr6g3209 919 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 555 586 IPR000225 GO:0005515
Tpr6g3209 919 SUPERFAMILY RNI-like 64 294 - -
Tpr6g3209 919 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 511 556 IPR000225 GO:0005515
Tpr6g3209 919 SMART LRR_CC_2 177 202 IPR006553 -
Tpr6g3209 919 SMART LRR_CC_2 149 176 IPR006553 -
Tpr6g3209 919 SMART LRR_CC_2 203 228 IPR006553 -
Tpr6g3209 919 SMART LRR_CC_2 123 148 IPR006553 -
Tpr6g3209 919 PANTHER PROTEIN ARABIDILLO 1 1 905 IPR044583 -
Tpr6g3209 919 SMART arm_5 631 674 IPR000225 GO:0005515
Tpr6g3209 919 SMART arm_5 459 499 IPR000225 GO:0005515
Tpr6g3209 919 SMART arm_5 500 543 IPR000225 GO:0005515
Tpr6g3209 919 SMART arm_5 544 585 IPR000225 GO:0005515
Tpr6g3209 919 SMART arm_5 418 458 IPR000225 GO:0005515
Tpr6g3209 919 SMART arm_5 590 630 IPR000225 GO:0005515
Tpr6g3209 919 SMART arm_5 716 757 IPR000225 GO:0005515
Tpr6g3209 919 SMART arm_5 675 715 IPR000225 GO:0005515
Tpr6g3209 919 Gene3D - 590 678 IPR011989 -
Tpr6g3209 919 Gene3D - 679 766 IPR011989 -
Tpr6g3209 919 Gene3D - 526 589 IPR011989 -
Tpr6g3209 919 Gene3D - 375 525 IPR011989 -
Tpr6g3209 919 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 470 512 IPR000225 GO:0005515
Tpr6g3209 919 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 686 728 IPR000225 GO:0005515
Tpr6g3209 919 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 429 471 IPR000225 GO:0005515
Tpr6g3209 919 Pfam F-box-like 39 85 IPR001810 GO:0005515
Tpr6g3209 919 Gene3D Ribonuclease Inhibitor 32 315 IPR032675 -
Tpr6g3209 919 ProSiteProfiles F-box domain profile. 36 82 IPR001810 GO:0005515
Tpr6g3209 919 Pfam Armadillo/beta-catenin-like repeat 631 673 IPR000225 GO:0005515
Tpr6g3209 919 Pfam Armadillo/beta-catenin-like repeat 677 714 IPR000225 GO:0005515
Tpr6g3209 919 Pfam Armadillo/beta-catenin-like repeat 464 498 IPR000225 GO:0005515
Tpr6g3209 919 Pfam Armadillo/beta-catenin-like repeat 501 543 IPR000225 GO:0005515
Tpr6g3209 919 Pfam Armadillo/beta-catenin-like repeat 593 629 IPR000225 GO:0005515
Tpr6g3209 919 Pfam Armadillo/beta-catenin-like repeat 554 585 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g3209 Tpr-Chr6 34646076 34659864 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g3209 572 759 U-box Gene Family AT2G23140 35.979 6.61e-20 93.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g3209 - - ccaj:109792060 1509.2