Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g3200 ATGGGGTTTAGGAATAATGCAATTCAAGCAGGGAGTTTGGATGTGGGGGGGAAGTCAAAGGGAAAGGGAAAGATGAAGAGAGATGGTGATGAGAAGGAAATTGGGTGTTGTGTTAAATTTGGTTGCTTTGGAAAGTGTATACCTTCAAGATTAAAGGTTGATACTTCCAAAAATGGCACCACAAGTGCTCATAATGTGGAAAAACCATCTGTTAATGAGAAAAGAAAAAAGGAAAAAATTGCTCCACCAGGATCGTCTACAACTAGTAATGCGGAAAGTGTCCCTTCCACTCCAAAGTTCAGTGAGGAATTGAAGGTTTCTTCTCATTTGAGAAAATTCACATTCAATGAGCTAAAGATGGCAACTCGGAATTTTCGACCCGAGAGTCTTCTTGGTGAGGGAGGATTCGGTTGTGTTTTCAAAGGTTGGATTGAAGAGAACGGAACTGCACCTGTGAAACCAGGTACGGGACTTACCGTCGCGGTCAAGACCCTCAACCATGATGGACTTCAGGGTCACAAAGAGTGGCTTGCTGAGTTAGACATTCTCGGTGATATTGTCCACCCGAATCTAGTTAAATTGATTGGTTTCTGTATTGAAGATGACCAAAGATTATTGGTTTATCAGTTTATGCCGCGTGGAAGTTTGGAGAACCACCTCTTCAGAAGGTCCTTGCCACTTCCTTGGTCTATTAGAATGAAAATTGCGCTCGGTGCAGCAAAAGGTCTTAATTTTCTCCATGAAGAAGCTCAAAGGCCAATAATCTATCGTGATTTCAAGACATCTAACATTCTATTAGACGCGGAATACAATGCAAAACTCTCGGATTTTGGACTTGCCAAAGATGGTCCTCAAGGCGAAAATACTCACATATCAACGAGAGTTATGGGAACATATGGTTATGCAGCTCCTGAGTATGTAATGACTGGTCATTTAACATCAAAAAGCGACGTTTATAGTTTTGGAGTAGTGCTACTTGAAATGCTCACTGGCCGACGAGCTGTTGATAAGAATAGACCAAACGGGGAACACAATCTTGTGGAGTGGGCGAGACCTGTACTTGGAGAACGGAGATTGTTATTCCAAATAATCGATCCTCGTCTTGAAGGCCACTTCTCGGTCAAAGGAGCGCAGAAAGCTGCCCAGCTAGCCGCTCAATGCCTCAGCCGTGATCCAAAAATCAGACCTATGATGAGTGAAGTTGTTCAAGCTTTGAAGCCTTTGCAAAACCTCAAGGATATGGCTATTACGTCATATCACTTTCAGGTAGTGCGAGTAGATCGTACCATGTCCATGCCGAATTCAAAAAATGGTACAAAAACACAATTAGCATCTTTGTCGAAGAAGGGTCAACCTATGAGGATATTGTCGAGTCCAAATGGTCAACACGGTTCTCCTTATCATCATTATATCAAGTCACCAAAACCTAAACATGGATAA 1440 0.4236 MGFRNNAIQAGSLDVGGKSKGKGKMKRDGDEKEIGCCVKFGCFGKCIPSRLKVDTSKNGTTSAHNVEKPSVNEKRKKEKIAPPGSSTTSNAESVPSTPKFSEELKVSSHLRKFTFNELKMATRNFRPESLLGEGGFGCVFKGWIEENGTAPVKPGTGLTVAVKTLNHDGLQGHKEWLAELDILGDIVHPNLVKLIGFCIEDDQRLLVYQFMPRGSLENHLFRRSLPLPWSIRMKIALGAAKGLNFLHEEAQRPIIYRDFKTSNILLDAEYNAKLSDFGLAKDGPQGENTHISTRVMGTYGYAAPEYVMTGHLTSKSDVYSFGVVLLEMLTGRRAVDKNRPNGEHNLVEWARPVLGERRLLFQIIDPRLEGHFSVKGAQKAAQLAAQCLSRDPKIRPMMSEVVQALKPLQNLKDMAITSYHFQVVRVDRTMSMPNSKNGTKTQLASLSKKGQPMRILSSPNGQHGSPYHHYIKSPKPKHG* 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g3200 479 Pfam Protein kinase domain 128 403 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr6g3200 479 SUPERFAMILY Protein kinase-like (PK-like) 99 405 IPR011009 -
Tpr6g3200 479 PANTHER OS01G0588500 PROTEIN-RELATED 63 470 - -
Tpr6g3200 479 MobiDBLite consensus disorder prediction 457 479 - -
Tpr6g3200 479 PANTHER RECEPTOR-LIKE KINASE PLANT 63 470 - -
Tpr6g3200 479 ProSitePatterns Protein kinases ATP-binding region signature. 131 163 IPR017441 GO:0005524
Tpr6g3200 479 CDD STKc_IRAK 131 408 - -
Tpr6g3200 479 MobiDBLite consensus disorder prediction 82 100 - -
Tpr6g3200 479 Gene3D Transferase(Phosphotransferase) domain 1 211 427 - -
Tpr6g3200 479 MobiDBLite consensus disorder prediction 56 100 - -
Tpr6g3200 479 ProSitePatterns Serine/Threonine protein kinases active-site signature. 254 266 IPR008271 GO:0004672|GO:0006468
Tpr6g3200 479 MobiDBLite consensus disorder prediction 1 28 - -
Tpr6g3200 479 ProSiteProfiles Protein kinase domain profile. 125 409 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr6g3200 479 Gene3D Phosphorylase Kinase; domain 1 105 210 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g3200 Tpr-Chr6 34508934 34513096 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g3200 101 421 Glycoside Hydrolase AT3G07070 52.761 2.77e-116 346
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Tpr6g3200 Pkinase 3.8e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g3200 - - aprc:113861691 827.78
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr2g0376 2 4483449 4487626 Tpr6g3200 6 34508934 34513096 PCT