Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g3197 ATGGCTGGATTTGGAAGTAAGATTGCCTTTATTTTCTTGGTTTTTGCCATTACTATTCCATGTCTTGAGGCAGGTATTGCTGAGTTTGATGATTATCTTAAAGAACAAGCCCATTTAGCTCACGAAATTGCTCTTAAGTCCTATGTGCCCAATCCTGAAAACATTACAAGTGATCTCAATCTACATGTTCACAAGGCAATGCAAGAGGCAATGGAAGAGGTGTCTTTAAATAGCACAAGGAGGGAACTAATACAAGCTAGAGGTGGAAGAGGCGGTCATCGCGGTAGAAGATGCCTAGCCACCAATCCAATTGACCGTTGTTGGAGGTGTAGAAGAGATTGGGCCCAAAACCGTCAATTGTTAGCCAAATGTGGAAAAGGTTTTGGTAGAAAGGCCGTAGGAGGACTTGGTGGTAAGTACTATGTTGTCACCGATCCATCCGACAATGATATGGTGAACCCAAAACCTGGCACTCTCCGATTTGGTGTCGTTCAAAAGGGACCACTTTGGATCATTTTCCAACGTAACATGGTTATTACATTGAAACAAGAATTGTTAGTTTCATCTGACAAGACCATCGATGGTCGTGGAGCCAATGTGCAAATTAGGGACGGCGCTGGTATTACTTTGCAGTTTGTGAACAATGTCATCATTCACGGTCTTCGCATAAAGAACATTAAGTCTAGGAATGGTGGTATGATTAGAGATTCTTTTGATCACGTTGGACTTAGAACAAGGAGCGATGGCGATGCTATCTCTATCTATGGTTCATCAAACATCTGGATTGATCATCTTTCCTTATCTAACTGTGAGGATGGTCTTGTTGATGTTATTTATGGCTCTACTGCAGTCACAATATCAAATTGCCACTTGACCAAACATAATGATGTGATGTTGTTTGGAGCTAGTGATACATTTAAAGATGACAAGATAATGCAAATTACAGTTGCATTCAACCATTTTGGACAAGGATTAATCCAAAGAATGCCAAGGTGTAGATGGGGATTTGTACATGTTTTGAACAATGATTACACACATTGGATTATGTATGCAATTGGTGGTAGTTCAGGACCAACAATTCTTAGTCAAGGAAACCGTTTCATTGCACCTGACAACAATGCTGCAAAAATAGTTACACATAGAGATTATGCATCACAAGATGTTTGGTCAAAATGGCAATGGACATCACAAGATGATTTTTTCATGAATGGTGCTCAATTTGTTCAATCTGGTTCTCCTATTAAGAATCTTCCATTCAAAAAAGGATATTTGATGAAACCAAGACATGGTAGAGAAGCTAATAGGCTTACAAGGTTTGCTGGGGCACTCAATTGCATTGTGGGCAGACCTTGCTAG 1356 0.4004 MAGFGSKIAFIFLVFAITIPCLEAGIAEFDDYLKEQAHLAHEIALKSYVPNPENITSDLNLHVHKAMQEAMEEVSLNSTRRELIQARGGRGGHRGRRCLATNPIDRCWRCRRDWAQNRQLLAKCGKGFGRKAVGGLGGKYYVVTDPSDNDMVNPKPGTLRFGVVQKGPLWIIFQRNMVITLKQELLVSSDKTIDGRGANVQIRDGAGITLQFVNNVIIHGLRIKNIKSRNGGMIRDSFDHVGLRTRSDGDAISIYGSSNIWIDHLSLSNCEDGLVDVIYGSTAVTISNCHLTKHNDVMLFGASDTFKDDKIMQITVAFNHFGQGLIQRMPRCRWGFVHVLNNDYTHWIMYAIGGSSGPTILSQGNRFIAPDNNAAKIVTHRDYASQDVWSKWQWTSQDDFFMNGAQFVQSGSPIKNLPFKKGYLMKPRHGREANRLTRFAGALNCIVGRPC* 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g3197 451 Pfam Pectate lyase, N terminus 26 83 IPR007524 GO:0030570
Tpr6g3197 451 PANTHER PECTATE LYASE 18-RELATED 6 451 IPR045032 GO:0030570
Tpr6g3197 451 PRINTS Pollen allergen Amb family signature 124 141 IPR018082 -
Tpr6g3197 451 PRINTS Pollen allergen Amb family signature 148 173 IPR018082 -
Tpr6g3197 451 PRINTS Pollen allergen Amb family signature 184 200 IPR018082 -
Tpr6g3197 451 PRINTS Pollen allergen Amb family signature 248 269 IPR018082 -
Tpr6g3197 451 PRINTS Pollen allergen Amb family signature 328 347 IPR018082 -
Tpr6g3197 451 PRINTS Pollen allergen Amb family signature 350 369 IPR018082 -
Tpr6g3197 451 PRINTS Pollen allergen Amb family signature 392 416 IPR018082 -
Tpr6g3197 451 PRINTS Pollen allergen Amb family signature 422 445 IPR018082 -
Tpr6g3197 451 SMART amb_all 176 373 IPR002022 -
Tpr6g3197 451 SUPERFAMILY Pectin lyase-like 102 442 IPR011050 -
Tpr6g3197 451 Pfam Pectate lyase 183 367 IPR002022 -
Tpr6g3197 451 Gene3D - 101 444 IPR012334 -
Tpr6g3197 451 PANTHER PECTATE LYASE 6 451 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g3197 Tpr-Chr6 34490125 34492809 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g3197 6 451 Polysaccharide Lyase AT5G15110 53.291 1.50e-180 511
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g3197 K01728 - gmx:100780236 690.649
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr6g3197 6 34490125 34492809 Tpr5g3010 5 53040393 53042477 ECH
Tpr6g3197 6 34490125 34492809 Tpr6g3197 6 34490125 34492809 ECH
Tpr6g3197 6 34490125 34492809 Tpr2g0372 2 4448766 4451084 ECH
Tpr2g1910 2 22836851 22839747 Tpr6g3197 6 34490125 34492809 ECH