Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g3196 ATGGCAATGTTGATAGAAAATGAAGTCATGTGTATGAGAAAGAGTATGGAAGAAAAAGATGTAAAAGGAGCACGTAGTGTTAAGAGAAAAAGAAGAGAACATGCTATTGGACCAATCATAGATGATGATGATAACCACAATAAGAAGATGATAAAAAAACATATTGGTGAAAATTCTACAACTAATACTACAAAGAGAAGCTCAAGATTTCGTGGTGTTAGCAGACATAGATGGACTGGTCGATTTGAAGCTCACTTGTGGGACAAACTTTCTTGGAACATAACACAAAAAAAGAAAGGGAAGCAAGGGGCTTATGATGAAGAAGAATCTGCTGCAAGAGCATATGATTTAGCTGCACTTAAGTATTGGGGAACATCAACTTTCACTAATTTTCAGACATCAGATTATGAGAAAGAGATAGAAATAATGAAAACCATGACCAAAGAGGAGTACTTGGCCACATTAAGAAGAAAGAGCAGTGGTTTTTCAAGAGGTGTCTCAAAGTATAGAGGTGTTGCAAGGCATCACCATAATGGTAGATGGGAAGCAAGGATAGGAAGAGTTTTTGGAAACAAATATCTTTATCTAGGAACATATAGTACACAGGAGGAAGCTGCGCGTGCTTATGACATAGCTGCAATTGAATACAGAGGAATTCATGCTGTAACCAACTTTGAATTAAGCAGTTACATAAAATGGTTAAAGCCAGAAAGTGACAAAGAAGAAAAACATGAATCACAAGCATTACCAAATGAGTCACAAACAATGGAATCTCCAAATAACTCTACTCTATTACAAGAGTCAAAGTTATTAGCCCTTCAAAAGAGCTTTTTCATTCCAAATTGCATTAATTCCAATGAAAAGCAAGATTCTTCATCTTCATTTGAAAACAAAAACTATCATTTCTTGAGCAACAAGTCAACTTCTCCAACAGCGCTTAGTCTTCTCCTTCGGTCTTCGTTATTTAGAGAATTACTTGAAAAGAATTCAAATGTATCCGAGGATGAAGTCACCAGCGAGCATCATCAACAACAACAGCAAATAGCTAGTGATGATGAACTATGTGGAACCTTCTATGATGGTATTGACAATATCTCATTTGACTTTGATCCCAATATATGCAACATAGAATTGCAAGAAAGAGATTTGAATTCAATATTTTGTACATAA 1170 0.3538 MAMLIENEVMCMRKSMEEKDVKGARSVKRKRREHAIGPIIDDDDNHNKKMIKKHIGENSTTNTTKRSSRFRGVSRHRWTGRFEAHLWDKLSWNITQKKKGKQGAYDEEESAARAYDLAALKYWGTSTFTNFQTSDYEKEIEIMKTMTKEEYLATLRRKSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYSTQEEAARAYDIAAIEYRGIHAVTNFELSSYIKWLKPESDKEEKHESQALPNESQTMESPNNSTLLQESKLLALQKSFFIPNCINSNEKQDSSSSFENKNYHFLSNKSTSPTALSLLLRSSLFRELLEKNSNVSEDEVTSEHHQQQQQIASDDELCGTFYDGIDNISFDFDPNICNIELQERDLNSIFCT* 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g3196 389 ProSiteProfiles AP2/ERF domain profile. 69 132 IPR001471 GO:0003700|GO:0006355
Tpr6g3196 389 PANTHER BINDING PROTEIN, PUTATIVE-RELATED 19 366 - -
Tpr6g3196 389 CDD AP2 167 228 IPR001471 GO:0003700|GO:0006355
Tpr6g3196 389 Pfam AP2 domain 68 124 IPR001471 GO:0003700|GO:0006355
Tpr6g3196 389 Pfam AP2 domain 167 218 IPR001471 GO:0003700|GO:0006355
Tpr6g3196 389 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 19 366 - -
Tpr6g3196 389 SUPERFAMILY DNA-binding domain 68 133 IPR016177 GO:0003677
Tpr6g3196 389 MobiDBLite consensus disorder prediction 241 261 - -
Tpr6g3196 389 SUPERFAMILY DNA-binding domain 167 227 IPR016177 GO:0003677
Tpr6g3196 389 ProSiteProfiles AP2/ERF domain profile. 168 226 IPR001471 GO:0003700|GO:0006355
Tpr6g3196 389 SMART rav1_2 69 138 IPR001471 GO:0003700|GO:0006355
Tpr6g3196 389 SMART rav1_2 168 232 IPR001471 GO:0003700|GO:0006355
Tpr6g3196 389 PRINTS Ethylene responsive element binding protein signature 70 81 IPR001471 GO:0003700|GO:0006355
Tpr6g3196 389 PRINTS Ethylene responsive element binding protein signature 208 228 IPR001471 GO:0003700|GO:0006355
Tpr6g3196 389 Gene3D AP2/ERF domain 68 134 IPR036955 GO:0003700|GO:0006355
Tpr6g3196 389 Gene3D AP2/ERF domain 167 228 IPR036955 GO:0003700|GO:0006355
Tpr6g3196 389 CDD AP2 68 134 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g3196 Tpr-Chr6 34484377 34487230 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g3196 108 244 AP2-EREBP Transcription Factor Family AT5G57390 33.333 9.00e-12 64.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-AP2 Tpr6g3196 AP2 1.4e-09 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g3196 - - gmx:100792612 497.278
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr6g3196 6 34484377 34487230 Tpr6g3196 6 34484377 34487230 ECH