Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g3187 ATGTCAAAAATGTCTAGTCCAAGTAGTTCAGAGATAGAAGAGAAGAGAGTTACTTCAATTTTCAATGAAGCTGATTTATCTACTCAACAAGAAGAGGTTACAAAGGAAGACAAACTAATAGATGCAAAATCCAAAATGGGTGAGGTGAAAGAAGAAAACGAAAGATTGAAGATGATGCTATCGCGAGTTGAAAAAGACTACAACTCACTTCAACTCCGTTTCTTTGACATTGTTAACAAAGAGGTTTCTAACAAAGGAGTAGAAGATTCATCAACTCCACATGACGAAATCGATGAAGAACCTGAGCTTGTATCACTGTGCCTCGGAAGAAGTCCAAATGAGCATAAGAAAGAAGCAAAAATTGATCAAAATTCAAATAAGCCTAAAGAAAAAGAAGACATGGAAGTTAACCTTAGTCTTGGATTAGATTCCAAATATATGTTGTCTATGGAGTTAGTATCTGATTTGAGTCCAATGAATAGCTCAGAAGAATTACCAAAGGAAGTTGAAGTTGAAGAAAAAGGAACATTATTGTCATCATCAACAAATAAATCAACAAAAGTGATTAATGTGGATGATGATATTTCAGATCAAATGCCAGCTAAGAGAGTTAGAGTATCTGTGAGGGCTAAATGTGACACTCCCACGATGAATGATGGATGTCAATGGAGGAAATATGGACAGAAGATAGCAAAAGGAAATCCATGTCCAAGAGCATACTATCGTTGCACAGTTGCACCAGCATGCCCAGTTAGGAAACAGGTACAAAGATGTGCTGATGATTTGTCCATATTAATCACAACATATGAAGGAACACATAACCATCCTCTTCAAGTTACAGCATCAGCCATGGCATACACAACTTCAGCTGCAGCTTCAATGATGTTATCAGGTTCATCAACATCATCATCATCATCACATCAAAACATTCAACATCAAAATATTCATCATCAAAATTCCACATCTTTTGGAAATTCTTCAACACTACTCAATGGCCTAAATTTCAACAATAACTACTTTGAACAATCAAGAACACCAAAACAACAATTCTTCATTCCACAAAACCATAATAATTTGTTCCCAACAATCACTCTTGACCTAACTTCTCCTTCATCAATATCATCATCATCATCCAACATAGCTTCAATTCCAAGATTTCCTCCAAATAATCTCAATTTTTGTTCTACACAACCACCAAATTTCACACCAACATCAACCATTTGGAACAACAACAAATTAGGGTTAGGGTTCATTAACAATAACACATTACCTATTGAAAAACCACAAATTAGGCCTTTTAACCATTTCCAAGAAAATTTCTATCAAAATCAAAATTGTGTGACAAATTATCAAACACCTTCAAGGCAAGCATTGGCGGAAACAATTAGCAAAGCAATAAGCACTGATCCAAGTCTTCATTCAGTTATAGCTGCCGCAGTTACATCGATTGTAGGACAAGGATCAAACAATGGTGGAAATCAAGAAGAGTTAAGAGATAACGGTTTAGGTTCAGGATTGAATTTGAAACTTGGTGAGTATCCTCAAATGGTTTCAAACAATTTGTTGAATCAAAATGGGAAAGGATGTTTGAAGGGTTCATACTTCAAAAGGTTGTCACCAACAACAAGTTCACAAGCCAAAAACTTCATGCTTCTTCAACCATCATTGCCAAATTCTCTTTCTAAGAGTAACACAACTAGACCTCCATCCATTGTTAATCATATCAATCATTGTGATCCAAAAATGAACACACATCATTAG 1761 0.3543 MSKMSSPSSSEIEEKRVTSIFNEADLSTQQEEVTKEDKLIDAKSKMGEVKEENERLKMMLSRVEKDYNSLQLRFFDIVNKEVSNKGVEDSSTPHDEIDEEPELVSLCLGRSPNEHKKEAKIDQNSNKPKEKEDMEVNLSLGLDSKYMLSMELVSDLSPMNSSEELPKEVEVEEKGTLLSSSTNKSTKVINVDDDISDQMPAKRVRVSVRAKCDTPTMNDGCQWRKYGQKIAKGNPCPRAYYRCTVAPACPVRKQVQRCADDLSILITTYEGTHNHPLQVTASAMAYTTSAAASMMLSGSSTSSSSSHQNIQHQNIHHQNSTSFGNSSTLLNGLNFNNNYFEQSRTPKQQFFIPQNHNNLFPTITLDLTSPSSISSSSSNIASIPRFPPNNLNFCSTQPPNFTPTSTIWNNNKLGLGFINNNTLPIEKPQIRPFNHFQENFYQNQNCVTNYQTPSRQALAETISKAISTDPSLHSVIAAAVTSIVGQGSNNGGNQEELRDNGLGSGLNLKLGEYPQMVSNNLLNQNGKGCLKGSYFKRLSPTTSSQAKNFMLLQPSLPNSLSKSNTTRPPSIVNHINHCDPKMNTHH* 587
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g3187 586 SMART WRKY_cls 217 277 IPR003657 GO:0003700|GO:0006355|GO:0043565
Tpr6g3187 586 PANTHER WRKY TRANSCRIPTION FACTOR 72-RELATED 38 569 - -
Tpr6g3187 586 Coils Coil 39 73 - -
Tpr6g3187 586 Pfam WRKY DNA -binding domain 218 276 IPR003657 GO:0003700|GO:0006355|GO:0043565
Tpr6g3187 586 ProSiteProfiles WRKY domain profile. 212 278 IPR003657 GO:0003700|GO:0006355|GO:0043565
Tpr6g3187 586 MobiDBLite consensus disorder prediction 1 28 - -
Tpr6g3187 586 MobiDBLite consensus disorder prediction 110 133 - -
Tpr6g3187 586 SUPERFAMILY WRKY DNA-binding domain 211 277 IPR036576 GO:0003700|GO:0006355|GO:0043565
Tpr6g3187 586 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 38 569 IPR044810 GO:0003700
Tpr6g3187 586 MobiDBLite consensus disorder prediction 157 180 - -
Tpr6g3187 586 Gene3D WRKY domain 202 277 IPR036576 GO:0003700|GO:0006355|GO:0043565
Tpr6g3187 586 MobiDBLite consensus disorder prediction 111 133 - -
Tpr6g3187 586 MobiDBLite consensus disorder prediction 1 39 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g3187 Tpr-Chr6 34418980 34423086 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g3187 46 485 WRKY Transcription Factor Family AT5G15130 44.093 4.32e-84 270
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Tpr6g3187 WRKY 5.5e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g3187 - - mtr:MTR_7g009730 833.172
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr6g3187 6 34418980 34423086 Tpr5g3014 5 53082180 53086789 ECH
Tpr6g3187 6 34418980 34423086 Tpr6g3187 6 34418980 34423086 ECH