Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g3186 ATGGGTTATCTTAGAAAAGTTTCCAAAACCTTAAAACAATCAAATTATGTTTCATTATTGTTCAATTACAATTTCACTCCATTATCAAACAGAATAACCCATCAAAGATTTTCCTTAAAACGTGCACTTTTCTGTACCCAATCACGTCAAAATAGTACCAAAGAGAAACCCATTATAGATTTGAGTCAGTACCCACCAGAGCTTGTGAGAAATTTCTCAATCATTGCACATGTTGATCATGGAAAATCTACTCTTGCTGATAGGCTTCTTGAACTCACTGGAACTATTAAGAAAGGAATTGGCCAACCTCAGTATCTTGATAAATTGCAGGTGGAGAGAGAAAGGGGAATCACGGTTAAAGCTCAGACAGCAACAATGTTTTATAAGAACATCATAAATGGTGATGATTCTCGTGATGGAAAGGAGTCACCTAATTATTTGTTGAATCTTATCGACACACCTGGGCATGTAGATTTCAGTTATGAAGTGTCAAGGTCACTAGCTGCTTGTCAGGGTGTGCTTTTGGTTGTTGATGCTGCTCAAGGAGTTCAAGCACAAACCGTTGCTAACTTTTACCTTGCCTTCGAATCTAACTTATCGATTATACCTGTCATTAACAAGATAGATCAGCCAACTGCTGATCCTGACCGTGTTAAAGCTCAATTGAAATCAATGTTTGATCTTGACACGAGTGATGTATTGCTAACATCGGCGAAAACTGGGAAGGGTCTTGAACATGTTCTTCCAGCAGTCATAGAGAGGATACCTCCGCCTCCTGGGAAGAGCGACTCTTCTTTACGTATGCTTTTACTTGATTCATATTTTGATGAATACAGAGGGGTGATATGCCATGTTGCTGTTGTTGATGGTGCCCTGCGCAAGGGGGATAAGATTTCTTCGGCGGCTACTGGCAAGTCATATGAAGCTTTGGATATAGGCATCATGCATCCTGAACTTACGCCTACTGGAATCTTGTTTACTGGACAAGTTGGTTATGTTATAAGTGGCATGCGGTCAACCAAAGAGGCACGCATTGGAGATACAATTTACCATGCACGAAGCACTGTGGATGTGGTACCTCTTCCAGGCTTCAAACCCGCAAAACATATGGTTTTTTCCGGTCTTTTTCCAGCTGATGGATCTGATTTTGAAGCACTCAACCATGCAATAGAGAAGCTTACATGCAATGATGCCAGTGTCTCTGTCGCTAAAGAAACTAGCACTGCTCTAGGTCTAGGGTTCAGGTGTGGATTTTTAGGCCTTCTTCACATGGATGTTTTTCATCAAAGGCTTGAACAGGAATATGGAGCTCATATTATCTCAACCGTTCCTACCGTGCCTTATATATATGAGTATTCTGATGGAAGCAAATTAGAAGTTCAGAATCCTGCTGCATTACCGTCTAATCCCAAGCAACGAGTGGTAGCCTGTTGGGAACCCACAGTAATAGCTACTATAGTTATGCCTAGTGAGTATGTTGGACCTGTTATCACCCTTCTCTCTGAGCGTAGGGGTGAACAGTTGGAGTACTCGTTCATTGACAGTCAACGAGTTTTCATGAAGTATCGTCTTCCTTTGAGGGAAGTTGTTATTGACTTTTATAATGAATTGAAGAGTATAACGTCAGGCTATGCATCATTTGATTATGAGGATTCAGATTATCAACAATCTGATCTGGTGAAACTTGATATTCTCTTGAATGGACAACCAGTTGATGCCATGTCAACCATTGTTCATAACTCGAAATCATATCGTGTTGGGCGTGAATTGGTGGACAAATTGAAGAAAGTCATAGACAGGCAAATGTTCGAGATATCCATACAAGCCGCTATTGGGTCAAAAATTATAGCAAGGGAGACTATTACGGCTATGAGAAAGAATGTTCTTGCCAAGTGTTATGGTGGTGATGTTTCACGAAAGAGGAAGCTATTGGAAAAGCAAAAGGAAGGGAAAAAGCGAATGAAACGTGTTGGTTCTGTTGATGTACCACAAGAAGCATTCCATGAACTATTGAAGGTTTCATAG 2025 0.4059 MGYLRKVSKTLKQSNYVSLLFNYNFTPLSNRITHQRFSLKRALFCTQSRQNSTKEKPIIDLSQYPPELVRNFSIIAHVDHGKSTLADRLLELTGTIKKGIGQPQYLDKLQVERERGITVKAQTATMFYKNIINGDDSRDGKESPNYLLNLIDTPGHVDFSYEVSRSLAACQGVLLVVDAAQGVQAQTVANFYLAFESNLSIIPVINKIDQPTADPDRVKAQLKSMFDLDTSDVLLTSAKTGKGLEHVLPAVIERIPPPPGKSDSSLRMLLLDSYFDEYRGVICHVAVVDGALRKGDKISSAATGKSYEALDIGIMHPELTPTGILFTGQVGYVISGMRSTKEARIGDTIYHARSTVDVVPLPGFKPAKHMVFSGLFPADGSDFEALNHAIEKLTCNDASVSVAKETSTALGLGFRCGFLGLLHMDVFHQRLEQEYGAHIISTVPTVPYIYEYSDGSKLEVQNPAALPSNPKQRVVACWEPTVIATIVMPSEYVGPVITLLSERRGEQLEYSFIDSQRVFMKYRLPLREVVIDFYNELKSITSGYASFDYEDSDYQQSDLVKLDILLNGQPVDAMSTIVHNSKSYRVGRELVDKLKKVIDRQMFEISIQAAIGSKIIARETITAMRKNVLAKCYGGDVSRKRKLLEKQKEGKKRMKRVGSVDVPQEAFHELLKVS* 675
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g3186 674 TIGRFAM small_GTP: small GTP-binding protein domain 73 247 IPR005225 GO:0005525
Tpr6g3186 674 Pfam Elongation factor Tu GTP binding domain 69 256 IPR000795 GO:0003924|GO:0005525
Tpr6g3186 674 PRINTS GTP-binding elongation factor signature 71 84 IPR000795 GO:0003924|GO:0005525
Tpr6g3186 674 PRINTS GTP-binding elongation factor signature 114 122 IPR000795 GO:0003924|GO:0005525
Tpr6g3186 674 PRINTS GTP-binding elongation factor signature 149 159 IPR000795 GO:0003924|GO:0005525
Tpr6g3186 674 PRINTS GTP-binding elongation factor signature 201 210 IPR000795 GO:0003924|GO:0005525
Tpr6g3186 674 SUPERFAMILY Translation proteins 257 354 IPR009000 -
Tpr6g3186 674 TIGRFAM lepA: elongation factor 4 69 673 IPR006297 GO:0005525
Tpr6g3186 674 Gene3D - 444 557 - -
Tpr6g3186 674 SUPERFAMILY EF-G C-terminal domain-like 478 572 IPR035647 -
Tpr6g3186 674 PANTHER TRANSLATION FACTOR GUF1, MITOCHONDRIAL 55 672 - -
Tpr6g3186 674 Gene3D - 67 260 IPR027417 -
Tpr6g3186 674 CDD EF4_III 369 444 - -
Tpr6g3186 674 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 66 280 IPR027417 -
Tpr6g3186 674 CDD LepA 70 258 - -
Tpr6g3186 674 CDD lepA_C 479 558 IPR035654 -
Tpr6g3186 674 CDD EF4_II 266 351 - -
Tpr6g3186 674 PANTHER TRANSLATION FACTOR GUF1-RELATED 55 672 IPR006297 GO:0005525
Tpr6g3186 674 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 107 122 IPR031157 -
Tpr6g3186 674 Gene3D Elongation Factor G (Translational Gtpase), domain 3 362 443 - -
Tpr6g3186 674 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 67 259 IPR000795 GO:0003924|GO:0005525
Tpr6g3186 674 Hamap Elongation factor 4 [lepA]. 65 674 IPR006297 GO:0005525
Tpr6g3186 674 Gene3D - 558 632 IPR038363 -
Tpr6g3186 674 SUPERFAMILY EF-G C-terminal domain-like 370 447 IPR035647 -
Tpr6g3186 674 Gene3D Translation factors 261 358 - -
Tpr6g3186 674 Pfam Elongation factor G C-terminus 479 564 IPR000640 -
Tpr6g3186 674 Pfam GTP-binding protein LepA C-terminus 566 672 IPR013842 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g3186 Tpr-Chr6 34411411 34418068 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g3186 69 210 Eukaryotic Initiation Factors Gene Family AT1G56070 41.497 6.94e-25 108
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g3186 K21594 - gmx:100781092 1179.85
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr6g3186 6 34411411 34418068 Tpr6g3186 6 34411411 34418068 ECH