Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g3180 ATGAACTTGATAAAATATTTAGTTTTTAATTTCTACGGTCCAAAAATGTGGATGGTCTTTCTTCTTCTTATATGGGGATTGATTATTGGGACTGAATCTTCTACATTGACATCTCAACCTGAAATGGAAGCAAATGCTATTTACAATAGTGGATGGTGGAACACTTCTGATGCTAACTATACCATCTCCAATCGGTGTAATTGGGGTCAGATATCTTGCAACAAGGCTGGAAGCATAATAAAAATCACCATAGACGGTTATTCAGATGAAGGGGTGCGGGGCAACATTTTTGGAACACTCAACTTGTCTACTTTCCACAATTTAGAAAGCCTTGTTATCAAGAATGTTATACTACAAGGGAGTATCCCAAAAGAAATTGGTCACCTCTCCAAGCTCACTCATCTTGATCTGTCCTCTAATTACCTTGTAGGTGAGATACCTCCTTCACTAGGAAACCTTACACAATTGAAGCACTTAGATATATCTGACAACTTATTTAATGGGAGTTTTCCTATTACTATCACAGGAATTGGACTAATTCATCTTGATTTGTCTAGTAATTCTTTTAAAGGTGAGGTACCTCATTTAATAAAAAATCTTAGACAATTAGAGTACCTAGACATATCTTACAATTGCATTGAAGGTTCTATTCCTTTTGAGTTGGGGTTCCTGAAAAATCTCACTACATTATTTCTATCTAACAATAGGCTCAAAGGTGAGATACCTTCTTCACTAGGAAATCTCAAAAAATTAGAGTCCCTAGACATCTCCAACAACAAAATTGAAGGTTCTATTCCTCTTGAGTTGGGATTCTTGAGAAAACTTACTAGATTAAATCTATCATTCAATAGACTCAACGGAAACTTGCCTATTTCCATTACAAATCTCACACAATTAGAATCCCTTAATATCTCTCACAATTATCTCAGAGGTTCCCTCCCATCTAACTTGGGTCAATTAAGTAACTTGCAATTATTTTGGTTAAATAACAACTCTTTCAATGGGACCTTTCCTATTTCTTTGAATAATCTCACACAATTAGTATACTTTGACATCTCATATAATTTTCTCACTGGTTCCCTTCCAATTTCGATAAGAAATTTCTTCCAATTAGAAACCCTTAACATTTCCCACAATTTACTCCTAGGTACCCTTCATTCCAATTTGTTTCCATTGACATATCATTACGCTTCCATTGACCTCAGTCACAATAACATTAGTGGTGAAATTCCCCAATCTATTTGTAATGTCTCTTATGTTGACATTTCCTACAATTATTTGAGGGGTCCCATTCCATTTTGTGTTCATCCTTCTGCAGTAATAGGGAACAAGGATGTATGTAATAACACTTCATGCGATCAAATCTACCTCCAAGGTCCCGTTTCAGAAAACAAATTCTACTTTCAACCTTGCTCGCCTGTTTTTCAACCGTGCCCGCCTGTTTTTAAACCTAGCCAACCTCCCAAGAAAATTAATAAAGTAAATCACCATGTTGCCATTTTTCTTCCGATCCTTATTGTTCTAATCCTAGCCTTCTCAAGTCTCGTGTGCTTTAAACTTTGTAATAATTCTACGAAGAAAAAGAATGGAAACACAACGACAACAAAGAATGGAGATGTGTTTTGTATATGGAATTATGATGGTAAAATAGCACATGATGACATCATCAAAGCAACAGAAGACTTTGACATGAGATATTGCATTGGTACAGGAGCATATGGAAGTGTTTATAAGGCGCAATTACCATGCGGAAAAGTTGTAGCCTTAAAAAAACTTCATGGTTATGAAGCAGAAGTGCCGGCTTTTGATGAAAGTTTTAGAAATGAAGTGAAAATATTATCAGAAATAAGGCACCGACATATTGTGAAGCTTTATGGATTCTGTTTGCACAAAAGAATCATGTTTTTGATCTACCAATACATGGAGAAAGGAAGCTTGTTCTCTGTCTTGTATGATGATGTAGAGGCCGTGGAATTCAATTGGAGAAAAAGGGTTAACATTGTTAAAGGAGTTGCATCTGCTCTTTCATATCTTCATCATGATTGCACGACTCCAATAGTGCATAGAGATGTATCTAGTGGAAATATCTTGCTAAACTCTGAGTGGCAGCCTAGTGTGTCTGACTTTGGCACAGCTCGACTCCTTCTACATGATTCATCCAATCGAACAATAGTTGCTGGAACAATCGGATATATAGCTCCTGAGCTTGCATATACTATGGTTGTGAGCGAAAAGTGTGATGTCTATAGTTTTGGAGTAGTAGCACTAGAAACTTTAATGGGAAGACACCCTCAGGAACTATTGTCGTCACTTCAATTAGCATCAACTCAAAACATGAAATTATGTGAAGTATTAGACCAACGTCTCCCATTTCCAAATAATGCGATGGTGTTACTTGACATAATTCGTGTAGCTGTAATAGCATTTGCATGCTTAAATTTCAATCCTAGCTCTCGACCAACGATGAAACGTGTGTCACAGAGCTTTGCCACTGAGCTTACACCATTAACCATTCCTTTGAGTGAAATTTCAATGCAGCAACTAATGAGTCAAGAATTCAAAGCATTATTTCATATTCTCAACCATTGA 2589 0.3646 MNLIKYLVFNFYGPKMWMVFLLLIWGLIIGTESSTLTSQPEMEANAIYNSGWWNTSDANYTISNRCNWGQISCNKAGSIIKITIDGYSDEGVRGNIFGTLNLSTFHNLESLVIKNVILQGSIPKEIGHLSKLTHLDLSSNYLVGEIPPSLGNLTQLKHLDISDNLFNGSFPITITGIGLIHLDLSSNSFKGEVPHLIKNLRQLEYLDISYNCIEGSIPFELGFLKNLTTLFLSNNRLKGEIPSSLGNLKKLESLDISNNKIEGSIPLELGFLRKLTRLNLSFNRLNGNLPISITNLTQLESLNISHNYLRGSLPSNLGQLSNLQLFWLNNNSFNGTFPISLNNLTQLVYFDISYNFLTGSLPISIRNFFQLETLNISHNLLLGTLHSNLFPLTYHYASIDLSHNNISGEIPQSICNVSYVDISYNYLRGPIPFCVHPSAVIGNKDVCNNTSCDQIYLQGPVSENKFYFQPCSPVFQPCPPVFKPSQPPKKINKVNHHVAIFLPILIVLILAFSSLVCFKLCNNSTKKKNGNTTTTKNGDVFCIWNYDGKIAHDDIIKATEDFDMRYCIGTGAYGSVYKAQLPCGKVVALKKLHGYEAEVPAFDESFRNEVKILSEIRHRHIVKLYGFCLHKRIMFLIYQYMEKGSLFSVLYDDVEAVEFNWRKRVNIVKGVASALSYLHHDCTTPIVHRDVSSGNILLNSEWQPSVSDFGTARLLLHDSSNRTIVAGTIGYIAPELAYTMVVSEKCDVYSFGVVALETLMGRHPQELLSSLQLASTQNMKLCEVLDQRLPFPNNAMVLLDIIRVAVIAFACLNFNPSSRPTMKRVSQSFATELTPLTIPLSEISMQQLMSQEFKALFHILNH* 863
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g3180 862 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 36 855 - -
Tpr6g3180 862 ProSitePatterns Protein kinases ATP-binding region signature. 568 590 IPR017441 GO:0005524
Tpr6g3180 862 ProSitePatterns Tyrosine protein kinases specific active-site signature. 686 698 IPR008266 GO:0004672|GO:0006468
Tpr6g3180 862 Gene3D Ribonuclease Inhibitor 178 454 IPR032675 -
Tpr6g3180 862 Pfam Leucine Rich repeats (2 copies) 131 168 IPR025875 -
Tpr6g3180 862 Gene3D Phosphorylase Kinase; domain 1 522 640 - -
Tpr6g3180 862 Pfam Leucine rich repeat 226 285 IPR001611 GO:0005515
Tpr6g3180 862 ProSiteProfiles Leucine-rich repeat profile. 226 249 IPR001611 GO:0005515
Tpr6g3180 862 ProSiteProfiles Protein kinase domain profile. 562 830 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr6g3180 862 SMART LRR_typ_2 200 221 IPR003591 -
Tpr6g3180 862 SMART LRR_typ_2 224 248 IPR003591 -
Tpr6g3180 862 SMART LRR_typ_2 272 295 IPR003591 -
Tpr6g3180 862 SMART LRR_typ_2 296 320 IPR003591 -
Tpr6g3180 862 SMART LRR_typ_2 129 153 IPR003591 -
Tpr6g3180 862 Gene3D Ribonuclease Inhibitor 39 177 IPR032675 -
Tpr6g3180 862 Gene3D Transferase(Phosphotransferase) domain 1 641 835 - -
Tpr6g3180 862 Pfam Leucine Rich Repeat 202 220 IPR001611 GO:0005515
Tpr6g3180 862 Pfam Protein kinase domain 568 827 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr6g3180 862 ProSiteProfiles Leucine-rich repeat profile. 250 273 IPR001611 GO:0005515
Tpr6g3180 862 SMART LRR_sd22_2 272 298 - -
Tpr6g3180 862 SMART LRR_sd22_2 200 221 - -
Tpr6g3180 862 SMART LRR_sd22_2 224 247 - -
Tpr6g3180 862 SMART LRR_sd22_2 129 155 - -
Tpr6g3180 862 SMART LRR_sd22_2 248 269 - -
Tpr6g3180 862 SUPERFAMILY RNI-like 113 429 - -
Tpr6g3180 862 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 36 855 - -
Tpr6g3180 862 PRINTS Leucine-rich repeat signature 251 264 - -
Tpr6g3180 862 PRINTS Leucine-rich repeat signature 296 309 - -
Tpr6g3180 862 SUPERFAMILY Protein kinase-like (PK-like) 549 827 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g3180 Tpr-Chr6 34364707 34367816 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g3180 102 734 Receptor kinase-like Gene Family AT4G08850 38.605 7.96e-135 426
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Tpr6g3180 Pkinase 6.6e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g3180 - - mtr:MTR_7g009970 1045.03