Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g3177 ATGAATTTGACAAAATCTTGTGTTTCTAATTTTAATGGTCCAAAAATGTGGAAGTTCCTTCTTGTTATTTGGGGTTTGGTGGTGGTAGGGACTGAACCTGCCACAGTGATATCTCAACTTCAAATGGAAGCAAATGCTATATTGAACAGTGGGTGGTGGAATATATCTGATGGACGCTTCAATATCTCTCATCGTTGTAATTGGTCTGAAATAACTTGCAACGAGGCTGGAAGCATAAGAACAATTCGCATAGACCCTAAGCGTATACATAGTGAAGCGTCGTCGGGGAAACATTTTACAACACTTAACATGTCTGCTTTCAACAATTTAGAAAGCCTTATTTTCAGACAAATTGGACTACAAGGGACTATTCCCACAGAAATTGGTCTTCTCTCCAAGCTCACTCATCTTGATATGTCCGACAATTTTCTTCAAGGTGAGATGCCTCTTTCGCTATGTAACCTTAGACAATTAAGGTACCTAGATATCTCTTACAATAAACTTGATGGATCCATTCCTAATGAGGTGTGTTACATTAAAAATCTCACTACATTAAATCTATCTAATAACTTCTTTAATGGGAGTTTTCCTATTTTCATCATAGGAATTGAACTAACTCATCTTGATTTGTCTAGAAATTATCTTGAAGGTGAGGTGAATCCTTCAATTGCAAACCTTAGACAATTAGAGTACTTAGACATCTCTTTTAACAATTTTCAAGGTTCCATTCCTCCTCAATGGTGGCTCCTAAAAAATCTCACCACATTAAATTTATCTAACAATAGATTCAAAGGTGAGATACCTTCTTCTTCGCTAGAAAATCTCAAGAAATTACAGTACCTATACATCTCTAACAACTACATTGAAGGTTCCATTCCTCTTGAGTTAGGATTCCTGAAAAATCTCACAACATTAAATCTATCTCGCAATAGATTCAATAGAAGCTTGCCTATATCCCTTATAAATCTCACACAATTACAATACCTCGATCTTTCATACAATTTTTTCACCGGTTCCCTCCCATCTAACTTCGGTCAATTAAGCAAATTGCAAGTGTTGCAGTTAAAAAACAACTCCATAGGAGGGATCTTTCCCATTTCACTGAATAATCTTTCTCAATTAGAAATTCTTGACATTTCTCACAATTTTCTTCTTGGTACACTTCCTTCCAATTTTTTTCCATTGACTGGTAACAAAATTTCAATTGACCTCAGTCATAACCTCATAAGTGGTAAAATTCCATCTCAGTTTGGGAAATTTTACCAACTTAATTTAAGCAATAATAATCTTATCGGAACAGTTCCACAATCTCTCTGTAATCTAAGTAACAATTTTATAAATGTGGACATTTCCTTCAATTATTTGAAGGGCCTTATTCCAAATTGTATTGATCCTCACACGATAATAGGGAACAAGGATGTATGTAGTGACATTTTACATGAACAAATCAACTTCCACTTTAAAGCTTGCAAGAAAAGTTATAAATTAAAGCCTGTTGTTGTCATCGTTCTTCCTACCTTTATCATTTTAATCCTAGCCTTCTCACTTCTCATATGCTTCATTCTTGGTCATAATTCTATTAAGAACAAGCGTGCAAGCACAACAACAATAGCGAAGAATGGAGATTTGTTTTGTATTTGGAATTATAATGGCAAAATAGCACACGATGACATCATTAGAGTAACCGAAGACTTTGACATGAGATATTGCATTGGAACAGGAGCATATGGAAGTGTTTACAAGGCACAATTACCATGTGGAAAAGTTGTTGCCTTAAAGAAACTTCACGGATATGAAGCAGAGGTGCCAGCTTTTGATGAGAGTTTTAGAAATGAAGTGAACATATTATCCGAAATAAGGCACCGACATATTGTGAAGCTTTATGGATTCTGCTTGCACAAAAGAATCATGTTTTTGATCTATCAATACATGGAGAAAGGAAGTTTGTTTTCTGTCTTGTATAATGATATAGATGCCGTCGAATTCAAATGGAGAAAAAGGGTTAACATTATTAAAGGAGTTGCATCTGCTCTATCATATCTTCATCATGATTTTACCTTTCCAATAGTGCATAGAGACATATCTAGTGGAAATATCTTGCTGAACAATGAGTGGCAGCCTAGTGTTTCTGACTTTGGCACAGCTCGACTCCTTCAACATGATTCATCCAATCAAACAATAGTTGCTGGAACAATTGGATATATAGCTCCTGAGCTTGCCTATACTATGGTTGTGAGTGAAAAGTGTGATGTATATAGTTTTGGTGTAGTGGTACTAGAAACTTTAATGGGAAGGCACCCTAAGGAAATATTGTCGTCACTTCAGTTAGGATCAGCTCAAAGCATGAAATTATGTGAAGTATTAGACCAACGTCTTCCACAACCAAATAATGTGACGGTTATACTCGGCATAATTCGTGTAGCTGTAATAGCATTTGCATGCTTAAATATCAATCCTTGCTCTCGACCAACAATGAAATGTGTGTCACAATGTTTTGGCATTGAGCTTCCTCCATTAACCATTCCTTTGAGTGAAATTTCGATACAGCAACTTATGAGTCAAGAATTCAAAGCATTATTTCATATTGTTGGCCCTGAAAAGCAAAACTTGTAA 2613 0.3563 MNLTKSCVSNFNGPKMWKFLLVIWGLVVVGTEPATVISQLQMEANAILNSGWWNISDGRFNISHRCNWSEITCNEAGSIRTIRIDPKRIHSEASSGKHFTTLNMSAFNNLESLIFRQIGLQGTIPTEIGLLSKLTHLDMSDNFLQGEMPLSLCNLRQLRYLDISYNKLDGSIPNEVCYIKNLTTLNLSNNFFNGSFPIFIIGIELTHLDLSRNYLEGEVNPSIANLRQLEYLDISFNNFQGSIPPQWWLLKNLTTLNLSNNRFKGEIPSSSLENLKKLQYLYISNNYIEGSIPLELGFLKNLTTLNLSRNRFNRSLPISLINLTQLQYLDLSYNFFTGSLPSNFGQLSKLQVLQLKNNSIGGIFPISLNNLSQLEILDISHNFLLGTLPSNFFPLTGNKISIDLSHNLISGKIPSQFGKFYQLNLSNNNLIGTVPQSLCNLSNNFINVDISFNYLKGLIPNCIDPHTIIGNKDVCSDILHEQINFHFKACKKSYKLKPVVVIVLPTFIILILAFSLLICFILGHNSIKNKRASTTTIAKNGDLFCIWNYNGKIAHDDIIRVTEDFDMRYCIGTGAYGSVYKAQLPCGKVVALKKLHGYEAEVPAFDESFRNEVNILSEIRHRHIVKLYGFCLHKRIMFLIYQYMEKGSLFSVLYNDIDAVEFKWRKRVNIIKGVASALSYLHHDFTFPIVHRDISSGNILLNNEWQPSVSDFGTARLLQHDSSNQTIVAGTIGYIAPELAYTMVVSEKCDVYSFGVVVLETLMGRHPKEILSSLQLGSAQSMKLCEVLDQRLPQPNNVTVILGIIRVAVIAFACLNINPCSRPTMKCVSQCFGIELPPLTIPLSEISIQQLMSQEFKALFHIVGPEKQNL* 871
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g3177 870 ProSitePatterns Protein kinases ATP-binding region signature. 571 593 IPR017441 GO:0005524
Tpr6g3177 870 ProSiteProfiles Protein kinase domain profile. 565 839 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr6g3177 870 Pfam Leucine Rich Repeat 157 175 IPR001611 GO:0005515
Tpr6g3177 870 Pfam Leucine Rich Repeat 205 226 IPR001611 GO:0005515
Tpr6g3177 870 Pfam Leucine Rich Repeat 133 155 IPR001611 GO:0005515
Tpr6g3177 870 Gene3D Phosphorylase Kinase; domain 1 525 643 - -
Tpr6g3177 870 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 247 858 - -
Tpr6g3177 870 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 36 269 - -
Tpr6g3177 870 Pfam Leucine rich repeat 325 382 IPR001611 GO:0005515
Tpr6g3177 870 Pfam Leucine rich repeat 252 312 IPR001611 GO:0005515
Tpr6g3177 870 ProSitePatterns Tyrosine protein kinases specific active-site signature. 689 701 IPR008266 GO:0004672|GO:0006468
Tpr6g3177 870 SUPERFAMILY Protein kinase-like (PK-like) 549 830 IPR011009 -
Tpr6g3177 870 SUPERFAMILY L domain-like 99 468 - -
Tpr6g3177 870 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 36 269 - -
Tpr6g3177 870 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 247 858 - -
Tpr6g3177 870 ProSiteProfiles Leucine-rich repeat profile. 252 274 IPR001611 GO:0005515
Tpr6g3177 870 Gene3D Transferase(Phosphotransferase) domain 1 644 834 - -
Tpr6g3177 870 Gene3D Ribonuclease Inhibitor 203 485 IPR032675 -
Tpr6g3177 870 Pfam Protein kinase domain 571 828 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr6g3177 870 Gene3D Ribonuclease Inhibitor 38 200 IPR032675 -
Tpr6g3177 870 SMART LRR_typ_2 250 274 IPR003591 -
Tpr6g3177 870 SMART LRR_typ_2 155 179 IPR003591 -
Tpr6g3177 870 SMART LRR_typ_2 347 370 IPR003591 -
Tpr6g3177 870 SMART LRR_typ_2 131 154 IPR003591 -
Tpr6g3177 870 SMART LRR_typ_2 323 346 IPR003591 -
Tpr6g3177 870 SMART LRR_typ_2 371 395 IPR003591 -
Tpr6g3177 870 SMART LRR_typ_2 299 322 IPR003591 -
Tpr6g3177 870 SMART LRR_typ_2 226 249 IPR003591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g3177 Tpr-Chr6 34339498 34342517 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g3177 120 737 Receptor kinase-like Gene Family AT4G08850 38.967 5.37e-128 407
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Tpr6g3177 Pkinase 8.1e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g3177 - - mtr:MTR_7g009970 986.867
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr6g3177 6 34339498 34342517 Tpr6g3177 6 34339498 34342517 ECH