Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g3175 ATGAACTTGACAAAATATTTAGTTTTTAATTTCTACGGTCCAAAAATGTGGATGGTCTTTCTTCTTCTTGTATGGGGATTGGTTATTGGGACTGAATCTTCTACATTGACATCTCAACCTGAAATGGAAGCAAATGCTATTTACAATAGTGGATGGTGGAACACTTCTGATGCTAACTATACCATCTCGAATCGGTGTAATTGGGGTCAGATATCTTGCAACAAGGCTGGAAGCATAATAAAAATCACCATAGACGGTTATTCAGATGAAGGGGTGCGGGGCAACAATTTTGGAACACTCAACTTGTCTACTTTCCACAATTTAGAAAGCCTTGTTATCATGAATGTTAGACTACAAGGGAGTATCCCAAAAGAAATTGGTCACCTCTCCAAGCTCACTCAACTTTATCTGTCCTCTAATTCCCTTGTAGGTGAGATACCTCCTTCACTAGGTAGTCTTAGACAATTAAAACACTTAGACATTTCTCACAACAGTCTTCAAGGTTCCATTCCTCATGAGTTGGGATTCTTGACAAATCTCACAACACTAGATCTATCTCAAAATCAAATCAAAGGTGATATGCCTCTTTCACTAGGAAATCTCACCAAACTCACTCATCTTATTTTGTATAAGAATTTTCTTTTAGGCGAGATACCTTCTTCACTAGGAAATCTCAAAAAATTAGAGTCCTTAGACATCTCCAACAACAAAATTGAAGGTTCTATTCCTCTTGAGTTGGGATTCTTGAGAAAACTCACTAGTTTATATCTATCATTCAATAGACTCAACGGAAACTTGCCTATTTCCATTACAAATCTCACACAATTAGAATCCCTTGATATCTCGTCCAATTTTCTCACAGGTTCCCTCCCATCTAACTTGGGTCAACTAAGTAACTTGCAATTATTTTGGTTAAATAACAACTCCTTCAATGGTACCTTTCCTATTTCATTAAATAATCTCACACAATTAGAATACCTTGATATCTCTAAAAATTTTCTCACAGGTTCCCTCCCATCTAACTTGGGTCAGTTAAGTAACTTGCAATTATTTTGGTTAAATAGCAACTCCTTCAATGGGACCTTTCCTATTACATTAAATAATCTCACACAATTAGAATTCCTTGATATCTCTCACAATTATCTCACAGGTTCCCTCCCATCTAACTTGGGTCAATTAAGCAACTTGCAATTCTTGTTGTTAAATAACAACTCCTTCAGTTGGACCTTTCCTATTTCTTTGAATAATCTTACAAAATTAGAATACCTTGACATGTCATATAATTTTCTCACCGGTTCCCTTCCAATTTCGTTAAGAAATTTCTCTCAATTAAAAACCCTTAACATTTCCCACAATTTTCTCCTTGGTACCCTTCATTCAAATTTGTTTCCATTCACATATAATAAAGCTTCAATTGACCTCAGTCACAATAACATTAGTGGTGAAATTCCTTCTACGCTAGGAGATTTTCAACAACTTCTTTTAAACCGTAATAATCTCAGTGGAACAATTCCCCAATCTATTTGTAATGTCTCTTATGTTGACATTTCCTACAATTATTTGAGGGGTCCCATTCCATTTTGTGTTCATCCTTCTGCAGTAATAGGGAACAAGGATGTATGTAATAACACTTCATGCGATCATATCTACTTCCAAGATTTCGTTTCAGAAAACAAATTCTACTTTCAACCTTGCTCGCCTATTTTTCAACCGTGCCCGCCTGTTTTTCAACCTAGCCCACCTCCCAAGAAAATTAATAAAGTAAATCACCATGTTGCCATTTTTCTTCCTATCCTTATTGTTCTAATCTTAGCCTTCTCAAGTCTCGTATGCTTTAAACTTTGTAATAATTCTACGAAGAAAAAGAATGGAAACACAACGACAACAAAGAATGGAGATGTGTTTTGTATATGGAATTATGATGGTAAAATAGCACATGATGACATCATTAGAGCAACAGAAGACTTTGACATGAGATATTGTATTGGTACAGGAGCATATGGAAGTGTTTATAAGGCGCAATTACCATGCGGAAAAGTTGTAGCCTTAAAAAAACTTCACGGTTATGAAGCAGAAGTGCCGGCTTTTGATGAAAGTTTTAGAAATGAAGTGAAAATATTATCAGAAATAAGGCACCGACATATTGTGAAGCTTTATGGATTCTGCTTGCACAAAAGAATCATGTTTTTGATCTATCAATACATGGAGAAAGGAAGCTTGTTCTCTGTCTTGTATGATGATGTAGAGGCCGTGGAATTCAATTGGAGAAAAAGGGTTAACATTGTTAAAGGAGTAGCATCTGCTCTTTCATATCTTCATCATGATTGCACGACTCCAATAGTGCATCGAGATGTATCTAGTGGAAATATCTTGCTAAACTCCGAGTGGCAGCCTAGTGTGTCTGACTTTGGCACAGCTCGACTCCTTCAACATGATTCATCCAATCGAACAATAGTTGCTGGAACAATAGGATATATAGCTCCTGAGCTTGCATATACTATGGTTGTGAGCGAAAATTGTGATGTATATAGTTTTGGAGTAGTAGCACTAGAAACTTTACTGGGAAGGCACCCTCAAGAACTATTGTCTTCACTTCAGTTAGCATCAACTCAAAGTATGAAATTATGTGAAGTATTAGACCAACGTCTTCCATTTCCAAATAATGGGATGGTTTTACTTGACATAATTCGTGTAGTCGTAATAGCATTTGCATGCTTAAATTTCAATCCTAGCTCTCGACCAACGATGAAACGTGTGTCACAGAGCTTTGCCAGTGAGCTTACACCATTAACCATTCCTTTGAGTGAAATTTCAATGCAGCAACTTATGAGTCAAGAATTCAAAGCATTATTTCATATTCTCAACCATTGA 2871 0.3629 MNLTKYLVFNFYGPKMWMVFLLLVWGLVIGTESSTLTSQPEMEANAIYNSGWWNTSDANYTISNRCNWGQISCNKAGSIIKITIDGYSDEGVRGNNFGTLNLSTFHNLESLVIMNVRLQGSIPKEIGHLSKLTQLYLSSNSLVGEIPPSLGSLRQLKHLDISHNSLQGSIPHELGFLTNLTTLDLSQNQIKGDMPLSLGNLTKLTHLILYKNFLLGEIPSSLGNLKKLESLDISNNKIEGSIPLELGFLRKLTSLYLSFNRLNGNLPISITNLTQLESLDISSNFLTGSLPSNLGQLSNLQLFWLNNNSFNGTFPISLNNLTQLEYLDISKNFLTGSLPSNLGQLSNLQLFWLNSNSFNGTFPITLNNLTQLEFLDISHNYLTGSLPSNLGQLSNLQFLLLNNNSFSWTFPISLNNLTKLEYLDMSYNFLTGSLPISLRNFSQLKTLNISHNFLLGTLHSNLFPFTYNKASIDLSHNNISGEIPSTLGDFQQLLLNRNNLSGTIPQSICNVSYVDISYNYLRGPIPFCVHPSAVIGNKDVCNNTSCDHIYFQDFVSENKFYFQPCSPIFQPCPPVFQPSPPPKKINKVNHHVAIFLPILIVLILAFSSLVCFKLCNNSTKKKNGNTTTTKNGDVFCIWNYDGKIAHDDIIRATEDFDMRYCIGTGAYGSVYKAQLPCGKVVALKKLHGYEAEVPAFDESFRNEVKILSEIRHRHIVKLYGFCLHKRIMFLIYQYMEKGSLFSVLYDDVEAVEFNWRKRVNIVKGVASALSYLHHDCTTPIVHRDVSSGNILLNSEWQPSVSDFGTARLLQHDSSNRTIVAGTIGYIAPELAYTMVVSENCDVYSFGVVALETLLGRHPQELLSSLQLASTQSMKLCEVLDQRLPFPNNGMVLLDIIRVVVIAFACLNFNPSSRPTMKRVSQSFASELTPLTIPLSEISMQQLMSQEFKALFHILNH* 957
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g3175 956 SUPERFAMILY Protein kinase-like (PK-like) 643 921 IPR011009 -
Tpr6g3175 956 Gene3D Phosphorylase Kinase; domain 1 616 734 - -
Tpr6g3175 956 SUPERFAMILY L domain-like 93 340 - -
Tpr6g3175 956 SUPERFAMILY L domain-like 253 506 - -
Tpr6g3175 956 ProSiteProfiles Leucine-rich repeat profile. 179 202 IPR001611 GO:0005515
Tpr6g3175 956 ProSiteProfiles Leucine-rich repeat profile. 227 250 IPR001611 GO:0005515
Tpr6g3175 956 ProSitePatterns Tyrosine protein kinases specific active-site signature. 780 792 IPR008266 GO:0004672|GO:0006468
Tpr6g3175 956 ProSitePatterns Protein kinases ATP-binding region signature. 662 684 IPR017441 GO:0005524
Tpr6g3175 956 Pfam Leucine rich repeat 131 190 IPR001611 GO:0005515
Tpr6g3175 956 Pfam Leucine rich repeat 203 262 IPR001611 GO:0005515
Tpr6g3175 956 Gene3D Ribonuclease Inhibitor 194 289 IPR032675 -
Tpr6g3175 956 Gene3D Ribonuclease Inhibitor 36 193 IPR032675 -
Tpr6g3175 956 SMART LRR_typ_2 441 465 IPR003591 -
Tpr6g3175 956 SMART LRR_typ_2 201 225 IPR003591 -
Tpr6g3175 956 SMART LRR_typ_2 177 200 IPR003591 -
Tpr6g3175 956 SMART LRR_typ_2 417 440 IPR003591 -
Tpr6g3175 956 SMART LRR_typ_2 249 272 IPR003591 -
Tpr6g3175 956 SMART LRR_typ_2 369 393 IPR003591 -
Tpr6g3175 956 SMART LRR_typ_2 129 153 IPR003591 -
Tpr6g3175 956 SMART LRR_typ_2 321 345 IPR003591 -
Tpr6g3175 956 SMART LRR_typ_2 273 297 IPR003591 -
Tpr6g3175 956 Gene3D Ribonuclease Inhibitor 290 388 IPR032675 -
Tpr6g3175 956 Gene3D Transferase(Phosphotransferase) domain 1 735 929 - -
Tpr6g3175 956 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 36 339 - -
Tpr6g3175 956 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 270 949 - -
Tpr6g3175 956 PRINTS Leucine-rich repeat signature 156 169 - -
Tpr6g3175 956 PRINTS Leucine-rich repeat signature 177 190 - -
Tpr6g3175 956 Gene3D Ribonuclease Inhibitor 389 469 IPR032675 -
Tpr6g3175 956 SMART LRR_sd22_2 225 246 - -
Tpr6g3175 956 SMART LRR_sd22_2 417 443 - -
Tpr6g3175 956 SMART LRR_sd22_2 369 398 - -
Tpr6g3175 956 SMART LRR_sd22_2 249 264 - -
Tpr6g3175 956 SMART LRR_sd22_2 273 302 - -
Tpr6g3175 956 SMART LRR_sd22_2 321 350 - -
Tpr6g3175 956 SMART LRR_sd22_2 129 148 - -
Tpr6g3175 956 SMART LRR_sd22_2 177 203 - -
Tpr6g3175 956 ProSiteProfiles Protein kinase domain profile. 656 924 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr6g3175 956 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 270 949 - -
Tpr6g3175 956 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 36 339 - -
Tpr6g3175 956 Pfam Protein kinase domain 662 921 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr6g3175 956 Gene3D Ribonuclease Inhibitor 470 548 IPR032675 -
Tpr6g3175 956 Pfam Leucine Rich Repeat 443 463 IPR001611 GO:0005515
Tpr6g3175 956 Pfam Leucine Rich Repeat 275 295 IPR001611 GO:0005515
Tpr6g3175 956 Pfam Leucine Rich Repeat 419 440 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g3175 Tpr-Chr6 34326614 34348464 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g3175 102 828 Receptor kinase-like Gene Family AT4G08850 36.810 1.18e-153 478
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Tpr6g3175 Pkinase 8.4e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g3175 - - mtr:MTR_8g047210 998.423
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr6g3175 6 34326614 34348464 Tpr6g3175 6 34326614 34348464 ECH