Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g3173 ATGAACTTGATAAAATATTTAGTTTTTAATTTCTACGGTCCAAAAATGTGGATGGTCTTTCTTCTTCTTATATGGGGATTGATTATTGGGACTGAATCTTCTACATTGACATCTCAACCTGAAATGGAAGCAAATGCTATTTACAATAGTGGATGGTGGAACACTTCTAATGGATGGTGGAACACTTCTGATGGATACTACAACATCTCCAATCGGTGTAATTGGGGTCAGATATCTTGCAACAAGGCTGGAAGCATCATACAAATCAACATAGACGGATTTAATTCAGATTTGTGGGGAATAAGTTTTGGAACACTCAACTTGTCTACTTTCCACAATTTAGAAAGCCTTGTTATCATGAATGTTAGACTACGAGGGACTATCCCAAAAGAAATTGGTCACCTCTCCAAGCTCACTCATCTTGATCTGTCCTATAACTCCCTTGTAGGTGAGATACCTCCTTCACTAGGTAGTCTTAGACAATTAAAACACTTAGACATTTCTCACAACAGTCTTCAAGGTTCCATTCCTCATGAGTTGGGATTCTTGACAAATCTCACAACACTAGATCTATCTCAAAATCAAATCAAAGGTGAGATGCCTCTTTCACTAGGAAACCTTACACAATTAAAACACTTAGATATTTCTTACAACAGTCTTCAAGGTTCCATTCCTCATGAGTTGGGATTCTTGACAAATCTCACAACACTAGATCTATCTCATAATCAAATCAAAGGTGAGATACCTTCTTCACTAGGAAATCTCAAAAAATTAGAGTACCTAGACATCTCCAACAACAAAATTGAAGGTTCTCTTCCTCTTGAGTTGGGATTCTTGAGAAAACTGACTACATTAGATCTATCATTCAATAGTCTCAACGGAAACTTGCCTATTTCCATTACAAATCTCACACAATTAGAATCCCTTTATATCTCGTCCAATTTTCTCACAGGTTCCCTCCCATCTAACTTGGGTCAGTTAAATAATTTGCGAATCTTGTTGTTAAATAATAACTCCTTTAGGGGGACCTTTCCTATTTCTTTGAATAATCTCACACAATTAGAATACCTTGACATGTCATATAATTTTCTCACCGGTTCCCTTCCAATTTCGTTAAGAAATTTCTCTCAATTAAAAACCCTTAACATTTCCCACAATTTTCTCCTTGGTGCCCTTCATTCCAATTTGTTTCCATTCACATATTATAAAGCTTTTATTGACCTCAGTCACAATAACATTAGTGGTGACATTCCTTCTACGCTAGGAGATTTTCAACAACTTCTTTTAAACAATAATAATCTCACTGGAACAATTCCCCGATCTATTTGTGATGTCAATGATGTTGACATTTCCTACAATTATTTGAGGGGTCCCATTCCATTATGTGTTCAGCCTTCTGCAGTAATAGGAAACAAGGATGTATGCACTAAGTCTTATTACAATCAAACCTACTTCCAATATCCCGTTTTAAAAAACTTCCAACCATGTCGGCCTGCAAAGAAAAGTGATAGAGTAAATTACTATGTTGTCATTGTTCTTCCTATCCTAATAATTCTAATCTTAGCCTTCTCATTTCTCATGTGCTTTAAATTTCGTCATAAAAGCACAACAACATCAACAAAGAATGGAGATTTGTTTTGTATATGGAATTATGATGGGAAAATAGCATATGATGACATCATCAGAGCAACTGAAGACTTTGACATGAGATATTGCATTGGTACGGGAGCATATGGAAGTGTTTACAAGGCGCAATTACCATGTGGAAAAGTTGTAGCCTTAAAAAAACTTCACGGTTATGAAGCAGAAGTGCCGGCTTTTGATGAAAGTTTTAGAAATGAAGTGAAAATATTATCAGAAATAAGGCACCGACATATTGTGAAGCTTTATGGATTCTGCTTGCACAAAAGAATCATGTTTTTGATCTACCAATACATGGAGAAAGGAAGCTTGTTCTCTGTCTTGTATGATGATGTTGAAGCCACAAAATTCAATTGGAGAAAAAGGCTTAATATTGTTAAAGGAGTTTCATCTGCTCTTTCATATCTTCATCATGATTGCACGACTCCAATAGTGCATAGAGATGTATCTAGTGGAAATATCTTGCTAAACTCTGAGTGGCAGCCTAGTGTGTCTGACTTTGGCACAGCTCGACTCCTTCAACATGATTCATCCAATCGAACAATAGTTGCTGGAACAATCGGATATATAGCTCCTGAGCTTGCATATACTATGGTTGTGAGCGAAAAGTGTGATGTATATAGTTTTGGAGTAGTAGCACTAGAAACTTTAATGGGAAGGCACCCTCAAGAACTATTGTCTTCACTTCAATTAGCATCAACGCAAAACATGAAATTATGTGAAGTATTAGACCAACGTCTCCCATTTCCAAATAATGCGATGGTGTTACTTGACATAATTCGTGTAGCTGTAATAGCATTTGCATGCTTAAATTTCAATCCTAGCTCTCGACCAACGATGAAACGTGTGTCACAGAGCTTTGCCACTGAGCTTACACCATTAACCATTCCTTTGAGTGAAATTTCAATGCAGCAACTTATGAGTCAAGAATTCAAAGCATTATTTCATATTCTCAACCATTGA 2604 0.3641 MNLIKYLVFNFYGPKMWMVFLLLIWGLIIGTESSTLTSQPEMEANAIYNSGWWNTSNGWWNTSDGYYNISNRCNWGQISCNKAGSIIQINIDGFNSDLWGISFGTLNLSTFHNLESLVIMNVRLRGTIPKEIGHLSKLTHLDLSYNSLVGEIPPSLGSLRQLKHLDISHNSLQGSIPHELGFLTNLTTLDLSQNQIKGEMPLSLGNLTQLKHLDISYNSLQGSIPHELGFLTNLTTLDLSHNQIKGEIPSSLGNLKKLEYLDISNNKIEGSLPLELGFLRKLTTLDLSFNSLNGNLPISITNLTQLESLYISSNFLTGSLPSNLGQLNNLRILLLNNNSFRGTFPISLNNLTQLEYLDMSYNFLTGSLPISLRNFSQLKTLNISHNFLLGALHSNLFPFTYYKAFIDLSHNNISGDIPSTLGDFQQLLLNNNNLTGTIPRSICDVNDVDISYNYLRGPIPLCVQPSAVIGNKDVCTKSYYNQTYFQYPVLKNFQPCRPAKKSDRVNYYVVIVLPILIILILAFSFLMCFKFRHKSTTTSTKNGDLFCIWNYDGKIAYDDIIRATEDFDMRYCIGTGAYGSVYKAQLPCGKVVALKKLHGYEAEVPAFDESFRNEVKILSEIRHRHIVKLYGFCLHKRIMFLIYQYMEKGSLFSVLYDDVEATKFNWRKRLNIVKGVSSALSYLHHDCTTPIVHRDVSSGNILLNSEWQPSVSDFGTARLLQHDSSNRTIVAGTIGYIAPELAYTMVVSEKCDVYSFGVVALETLMGRHPQELLSSLQLASTQNMKLCEVLDQRLPFPNNAMVLLDIIRVAVIAFACLNFNPSSRPTMKRVSQSFATELTPLTIPLSEISMQQLMSQEFKALFHILNH* 868
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g3173 867 SUPERFAMILY RNI-like 117 457 - -
Tpr6g3173 867 Gene3D Transferase(Phosphotransferase) domain 1 646 840 - -
Tpr6g3173 867 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 200 307 - -
Tpr6g3173 867 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 247 860 - -
Tpr6g3173 867 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 36 252 - -
Tpr6g3173 867 Gene3D Ribonuclease Inhibitor 45 249 IPR032675 -
Tpr6g3173 867 Pfam Leucine rich repeat 113 172 IPR001611 GO:0005515
Tpr6g3173 867 Pfam Leucine rich repeat 184 244 IPR001611 GO:0005515
Tpr6g3173 867 Pfam Leucine rich repeat 329 386 IPR001611 GO:0005515
Tpr6g3173 867 ProSiteProfiles Protein kinase domain profile. 567 835 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr6g3173 867 ProSitePatterns Protein kinases ATP-binding region signature. 573 595 IPR017441 GO:0005524
Tpr6g3173 867 PRINTS Leucine-rich repeat signature 162 175 - -
Tpr6g3173 867 PRINTS Leucine-rich repeat signature 231 244 - -
Tpr6g3173 867 Pfam Leucine Rich Repeat 305 325 IPR001611 GO:0005515
Tpr6g3173 867 Pfam Leucine Rich Repeat 257 278 IPR001611 GO:0005515
Tpr6g3173 867 Gene3D Phosphorylase Kinase; domain 1 529 645 - -
Tpr6g3173 867 SMART LRR_sd22_2 135 154 - -
Tpr6g3173 867 SMART LRR_sd22_2 279 305 - -
Tpr6g3173 867 SMART LRR_sd22_2 183 204 - -
Tpr6g3173 867 SMART LRR_sd22_2 255 276 - -
Tpr6g3173 867 SMART LRR_sd22_2 231 254 - -
Tpr6g3173 867 SMART LRR_sd22_2 351 377 - -
Tpr6g3173 867 SMART LRR_sd22_2 207 228 - -
Tpr6g3173 867 SUPERFAMILY Protein kinase-like (PK-like) 548 832 IPR011009 -
Tpr6g3173 867 ProSiteProfiles Leucine-rich repeat profile. 185 206 IPR001611 GO:0005515
Tpr6g3173 867 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 200 307 - -
Tpr6g3173 867 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 36 252 - -
Tpr6g3173 867 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 247 860 - -
Tpr6g3173 867 ProSitePatterns Tyrosine protein kinases specific active-site signature. 691 703 IPR008266 GO:0004672|GO:0006468
Tpr6g3173 867 Pfam Protein kinase domain 573 832 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr6g3173 867 ProSiteProfiles Leucine-rich repeat profile. 257 280 IPR001611 GO:0005515
Tpr6g3173 867 ProSiteProfiles Leucine-rich repeat profile. 233 256 IPR001611 GO:0005515
Tpr6g3173 867 SMART LRR_typ_2 231 255 IPR003591 -
Tpr6g3173 867 SMART LRR_typ_2 279 302 IPR003591 -
Tpr6g3173 867 SMART LRR_typ_2 375 399 IPR003591 -
Tpr6g3173 867 SMART LRR_typ_2 207 229 IPR003591 -
Tpr6g3173 867 SMART LRR_typ_2 351 374 IPR003591 -
Tpr6g3173 867 SMART LRR_typ_2 183 206 IPR003591 -
Tpr6g3173 867 SMART LRR_typ_2 135 159 IPR003591 -
Tpr6g3173 867 SMART LRR_typ_2 303 327 IPR003591 -
Tpr6g3173 867 Gene3D Ribonuclease Inhibitor 250 484 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g3173 Tpr-Chr6 34278922 34301640 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g3173 109 739 Receptor kinase-like Gene Family AT4G08850 39.235 6.47e-142 444
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Tpr6g3173 Pkinase 2.3e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g3173 - - mtr:MTR_7g009970 1037.33
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr6g3173 6 34278922 34301640 Tpr6g3173 6 34278922 34301640 ECH