Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g3168 ATGTCTAGCAGAAGATCAAGGCAACAATCAGGAGGGTCTACAAGAATCTCTGATGATCAAATTATTGATCTTGTTTGCAAGTTGCGTCAACTCATTCCAGAAATTCGCAATAGGCGCTCCGACAAGGTACCAGCTTCTAAGGTCCTACAAGAAACTTGCAACTATATCAGAAACTTACAAAGAGAGGTTGATGATTTAAGCATGCGATTGTCTCAATTGTTGGCTACAATTGATGCTGATAGTGCTGAAGCTTCTATCATTAGGAGCCTACTTAACCAATGA 282 0.4007 MSSRRSRQQSGGSTRISDDQIIDLVCKLRQLIPEIRNRRSDKVPASKVLQETCNYIRNLQREVDDLSMRLSQLLATIDADSAEASIIRSLLNQ* 94
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g3168 93 PANTHER TRANSCRIPTION REGULATOR 1 91 - -
Tpr6g3168 93 Pfam Helix-loop-helix DNA-binding domain 20 60 IPR011598 GO:0046983
Tpr6g3168 93 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 23 79 IPR036638 GO:0046983
Tpr6g3168 93 PANTHER TRANSCRIPTION FACTOR PRE 1 91 IPR044293 GO:0006355|GO:0040008|GO:0046983
Tpr6g3168 93 Coils Coil 49 76 - -
Tpr6g3168 93 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 5 59 IPR011598 GO:0046983
Tpr6g3168 93 CDD bHLH_AtPRE_like 12 76 - -
Tpr6g3168 93 Gene3D - 15 88 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g3168 Tpr-Chr6 34241381 34242890 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g3168 13 91 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G39860 72.500 2.91e-34 111
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Tpr6g3168 HLH 0.00017 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g3168 - - jre:109002575 143.28
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr6g3168 6 34241381 34242890 Tpr3g4389 3 48815000 48817066 ECH
Tpr6g3168 6 34241381 34242890 Tpr6g3168 6 34241381 34242890 ECH
Tpr6g3168 6 34241381 34242890 Tpr2g0357 2 4282403 4286134 ECH
Tpr2g1926 2 23111487 23113157 Tpr6g3168 6 34241381 34242890 ECH
Tpr7g1232 7 12712876 12714696 Tpr6g3168 6 34241381 34242890 ECH
Tpr2g0357 2 4282403 4286134 Tpr6g3168 6 34241381 34242890 PCT