Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g3165 ATGGGAAGACCACCTTGTTGTGACAAAGAAGGTGTAAAGAAGGGACCATGGACACCTGAAGAAGATATCATACTTGTTACTTATATACAAGAACATGGTCCTGGAAATTGGAGGGCTGTTCCAACCAAGACAGGCTTGTCAAGATGCAGCAAAAGTTGTAGACTTAGATGGACTAATTACTTAAGGCCAGGAATCAAAAGGGGTAACTTCACTGAACAAGAGGAGAAGATGATTATTCATCTTCAAGATCTTTTAGGAAATAGATGGGCTGCAATAGCATCATACCTTCCACAAAGAACAGATAATGACATAAAAAATTATTGGAATACTCATTTGAAAAAGAAGCTCAAAAAATTGCAAGCAGGTAAAAATAATTCTGAAGGAAATTTTGAAGAAGAAAATTTTTCAGCATCACAAAGAATTCCTAGAGGTCAATGGGAAAGAAGACTTCAAACAGATATTCACATGGCCAAAAAAGCACTTAATGAAGCACTTTCAGTTTCACCACAAAAATTATCTTCTGATTTTTCTACTTCAAACCTTTCTAATAGTAATAACTCTATTTCTTCAACTAAAGAATTACCACAATCTAGTTGCTATGCTTCAAGTGCTGATAACATAGCTAAGTTACTTAAGGGTTGGATGAAAAATCCAATAAAATCATCTAGAAGTACTAATTCATCTGTGGCACAAAATTCATTCAACAACATTGATTGTGTTTCTAGTAGTGGAACAAAGGGTGAAAGTGAAATATTGTCTGAGACTTTTGAATCTTTGTTTGGTTTTGAGAGTTTGGAATCTTTGGAGTCTTCGAATTCCGAATTCTCTCATCAATCTTTGTCGCCGGATGCAACGATTTTACAAGATGAAAGTAAGCCTGAAGTTGGTTCAGAAACAATGCCCTTTTCTTTGCTTGAGAAATGGCTTCTTGATGAAGCTTGTTGTCCTGAGAAAGTTGGATTAGGTTGTGGTGATCATGCTCAAGTTTTCTAG 993 0.3565 MGRPPCCDKEGVKKGPWTPEEDIILVTYIQEHGPGNWRAVPTKTGLSRCSKSCRLRWTNYLRPGIKRGNFTEQEEKMIIHLQDLLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKLKKLQAGKNNSEGNFEEENFSASQRIPRGQWERRLQTDIHMAKKALNEALSVSPQKLSSDFSTSNLSNSNNSISSTKELPQSSCYASSADNIAKLLKGWMKNPIKSSRSTNSSVAQNSFNNIDCVSSSGTKGESEILSETFESLFGFESLESLESSNSEFSHQSLSPDATILQDESKPEVGSETMPFSLLEKWLLDEACCPEKVGLGCGDHAQVF* 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g3165 330 Gene3D - 13 66 - -
Tpr6g3165 330 SMART sant 13 63 IPR001005 -
Tpr6g3165 330 SMART sant 66 114 IPR001005 -
Tpr6g3165 330 CDD SANT 16 61 IPR001005 -
Tpr6g3165 330 Gene3D - 69 139 - -
Tpr6g3165 330 MobiDBLite consensus disorder prediction 176 195 - -
Tpr6g3165 330 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 321 - -
Tpr6g3165 330 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Tpr6g3165 330 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Tpr6g3165 330 MobiDBLite consensus disorder prediction 119 138 - -
Tpr6g3165 330 CDD SANT 69 111 IPR001005 -
Tpr6g3165 330 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Tpr6g3165 330 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Tpr6g3165 330 MobiDBLite consensus disorder prediction 122 138 - -
Tpr6g3165 330 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Tpr6g3165 330 PANTHER TRANSCRIPTION FACTOR MYB-HB-LIKE FAMILY-RELATED 1 321 - -
Tpr6g3165 330 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Tpr6g3165 330 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g3165 Tpr-Chr6 34184945 34187025 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g3165 1 330 MYB Transcription Factor Family AT5G62470 50.552 8.20e-107 314
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Tpr6g3165 Myb_DNA-binding 1.2e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g3165 K09422 - gmx:778080 446.817