Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g3163 ATGGACTTAACCCCAAACCCAACAATAACACCAACACCAACAACAATACCAACAACCATTGTAACAACAACACCAACAACTACCTTAACTAAATCACCAGAACATGAAACCTCAACCCCCACAAAAATCACAACCTTAACAACTCCAAAAATCTCACCTTTTTCCAATGGTGTCCTCAAACGCCACAACCCCAATTACCACCACCACCACAACAACCACCACCACCACCAAGTAACCGTTACTTACAAAGAATGTCTCAAAAACCATGCAGCAAATTTAGGTGGTCATGCTCTCGACGGCTGCGGCGAATTCATGACAGCCCCCACCGCAACATCCGCCGACCCAACATCCTTAAAATGCGCTGCTTGTGGCTGTCACCGTAATTTCCACCGCCGTGAACCAGAAGAACCACCACTTTCAACAACCACACATGTCATTGAATATCAACCTCACCACCGTCACCAGCCACTTCCACCGCCGCCTTTTTCAAACCGCAGCCCAAATTCTTCTTCTCCACCGCCGATCTCCTCCACTTACTACCCTTCTGCACCTCATATGCTTCTTGCTCTCTCCTCCGCCTTGCCGGAAAACGTCTCCGGACCCATGATCTCACCTGGGTCCCACACTAGAAAACGTTTCAGAACAAAATTCACTCAAGATCAGAAAGATAAGATGTTGAAATTTGCTGAGAAAGTTGGTTGGAAGATGCAGAAAAAAGATGATGAATTTACTCATGAATTTTGTAATGAGATTGGTGTTGATCGAAGTGTTCTTAAAGTTTGGATGCATAACAACAAGAACACTTTCTCTAAACGAGAAAACATCAACATCAACAACAACAACAACAACAATAACATCAACAACATTAACAATAACAATGAGATTAATGTTGTTGGTGTTAAGAGTTTTCTACCTTATGAAGATGAAGAACACAACAAGATGAAGAATAACATTAACAAAGATGATATGAATGTTGAGATTCATAATCTTAATCATTACCAGAATGATGGTGGAGTTGTCGTTCGTGCTAATGGTTCATCTTCTTCTTAA 1050 0.419 MDLTPNPTITPTPTTIPTTIVTTTPTTTLTKSPEHETSTPTKITTLTTPKISPFSNGVLKRHNPNYHHHHNNHHHHQVTVTYKECLKNHAANLGGHALDGCGEFMTAPTATSADPTSLKCAACGCHRNFHRREPEEPPLSTTTHVIEYQPHHRHQPLPPPPFSNRSPNSSSPPPISSTYYPSAPHMLLALSSALPENVSGPMISPGSHTRKRFRTKFTQDQKDKMLKFAEKVGWKMQKKDDEFTHEFCNEIGVDRSVLKVWMHNNKNTFSKRENININNNNNNNNINNINNNNEINVVGVKSFLPYEDEEHNKMKNNINKDDMNVEIHNLNHYQNDGGVVVRANGSSSS* 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g3163 349 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 82 133 IPR006456 -
Tpr6g3163 349 Coils Coil 272 292 - -
Tpr6g3163 349 PANTHER HOMEOBOX DOMAIN, ZF-HD CLASS PROTEIN 9 295 - -
Tpr6g3163 349 MobiDBLite consensus disorder prediction 1 41 - -
Tpr6g3163 349 SUPERFAMILY Homeodomain-like 202 271 IPR009057 -
Tpr6g3163 349 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 210 267 IPR006455 -
Tpr6g3163 349 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 81 133 IPR006456 -
Tpr6g3163 349 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 9 295 - -
Tpr6g3163 349 Pfam ZF-HD protein dimerisation region 80 134 IPR006456 -
Tpr6g3163 349 Gene3D - 199 271 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g3163 Tpr-Chr6 34159237 34160873 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g3163 19 266 ZF-HD Transcription Factor Family AT5G15210 51.406 4.09e-69 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Tpr6g3163 ZF-HD_dimer 3.4e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g3163 - - gmx:100789447 329.717
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr2g0342 2 4062896 4064262 Tpr6g3163 6 34159237 34160873 PCT