Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g3161 ATGGAGGGAATGGATAGAACAAGATCAACATGCCGTTTGGTAACTGTTACAAATGAGTTGCAAAATCGTATAACCCAAAAGCAATCAATGTACCCTCCTGGCTTTCCAAGAAAGGTATTTGCAGAAGTTATAGGGACATATTTGTTGGTGTTTGTCGGAAGTGGGACTGCTGCTATGAATGCAATTGATGAAAACAAAGTGTCAAAATTGGGAGCATCACTTGCAAGTGGATTCATTGTTACTGTTATGATTTATGCAATTGGACACATCTCTGGTGCACACATGAATCCGGCTGTTTCCTTAGCTTTTGCCACCGTTAACCATTTTCCTTGGAAACAGATCCCATTTTACATTGCAGCTCAACTCACAGGAGCAATTTCTGCTTCATATACACTTAGAGTGTTGTTAGAACCATCAAAGCAGCTAGGGGCAACATCACCTTCTGGATCAAACATTCAAGCATTAATCATAGAAACTGTCACCACCTTCACCATGGTGTTCATTTCCACGGCGGTCGCCACAGACTCAAAAGCGACTAGAGAGCTTGCTGGAGTAGCAGTAGGTTCATCTGTTTGCATAGCAAGCATTGTTGCTGGACCAATATCAGGTGGGTCAATGAACCCAGCAAGGACATTAGGTCCTGCAATTGCTACTACATCCTACAAAGGAATTTGGGTCTATATGGTTGGACCAATTACTGGTGCACTTTTAGGTGCATGGTCTTATGTTGTGATTCAGGAGACAAATCATAAACAAGATATTGCAACTTCACAAACTCCTCTTTCAATCAAGTTACACAATGATATGAGTGGGATTGAGCTATAG 825 0.4158 MEGMDRTRSTCRLVTVTNELQNRITQKQSMYPPGFPRKVFAEVIGTYLLVFVGSGTAAMNAIDENKVSKLGASLASGFIVTVMIYAIGHISGAHMNPAVSLAFATVNHFPWKQIPFYIAAQLTGAISASYTLRVLLEPSKQLGATSPSGSNIQALIIETVTTFTMVFISTAVATDSKATRELAGVAVGSSVCIASIVAGPISGGSMNPARTLGPAIATTSYKGIWVYMVGPITGALLGAWSYVVIQETNHKQDIATSQTPLSIKLHNDMSGIEL* 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g3161 274 SUPERFAMILY Aquaporin-like 29 252 IPR023271 -
Tpr6g3161 274 Gene3D Glycerol uptake facilitator protein. 5 258 IPR023271 -
Tpr6g3161 274 PRINTS Major intrinsic protein family signature 37 56 IPR000425 GO:0015267|GO:0016020|GO:0055085
Tpr6g3161 274 PRINTS Major intrinsic protein family signature 76 100 IPR000425 GO:0015267|GO:0016020|GO:0055085
Tpr6g3161 274 PRINTS Major intrinsic protein family signature 113 132 IPR000425 GO:0015267|GO:0016020|GO:0055085
Tpr6g3161 274 PRINTS Major intrinsic protein family signature 157 175 IPR000425 GO:0015267|GO:0016020|GO:0055085
Tpr6g3161 274 PRINTS Major intrinsic protein family signature 188 210 IPR000425 GO:0015267|GO:0016020|GO:0055085
Tpr6g3161 274 PRINTS Major intrinsic protein family signature 225 245 IPR000425 GO:0015267|GO:0016020|GO:0055085
Tpr6g3161 274 Pfam Major intrinsic protein 35 242 IPR000425 GO:0015267|GO:0016020|GO:0055085
Tpr6g3161 274 ProSitePatterns MIP family signature. 94 102 IPR022357 -
Tpr6g3161 274 PANTHER AQUAPORIN NIP2-1 18 255 IPR034294 -
Tpr6g3161 274 CDD MIP 37 245 IPR000425 GO:0015267|GO:0016020|GO:0055085
Tpr6g3161 274 PANTHER MAJOR INTRINSIC PROTEIN, AQUAPORIN-LIKE PROTEIN-RELATED 18 255 - -
Tpr6g3161 274 TIGRFAM MIP: MIP family channel proteins 41 242 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g3161 Tpr-Chr6 34111017 34116508 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g3161 37 249 Major Intrinsic Protein MIP AT5G37820 49.065 4.93e-69 214
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g3161 K09874 - gmx:100788071 357.066