Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g3160 ATGGAAGGAGAAGGTGATAAGTGGCAGCAGCTGTGTGATGAAGATGTGGCTCTGAATATTCCTCTAATAGGTGCAGAACATGAAGGAAGCAACGGTCACAACAACAATGTTACCACATCTTTCCTTAAAACTTGTTTCAATGGCCTCAATGCTTTATCAGGTGTTGGAATATTATCAGTTCCATATGCTTTAGCCTCAGGAGGATGGTTAAGTTTAGCAATTTTATTTTCTATTGCAGCAGTAGCATTTTACTCAGGAATCTTAATGAAAAGATGCATGGAAAAAAATTCCAACATAAGAACTTATCCTGATATAGGTGAACTTGCATTTGGAAAAACAGGAAGATTAATAGTATCAATTTCAATGTACACAGAACTCTACTTGGTTTCAATAGGGTTCTTGATTCTAGAAGGAGATAATTTGAGTAACTTATTTCCAATTGAAGAGTTTCAAGTGGTTGGTTTATCAATTGGTTCAAAGCATTTTTTTGTGATTTTGGTTGCACTAATTATTTTGCCTACAATTTGGTTGGATAATTTGAGTCTTCTTTCTTATGTATCTGCAAGTGGTGTGTTTGCTTCTATAATCATAATTTTGTCAATATCATGGACCGGAGCATTTGATGGAGTTGGTTTTGATCAAAAGGGTGTTATTGTAAATTTGAATGGGATCCCTACAGCTGTTAGCTTGTATGCTTTTTGCTATTGTGCTCATCCAGTCTTCCCTACTCTCTACAATTCCATGAGGAACAAACATCAATTCTCTAATGTCCTAATTGTATGCTTTATAATAACCACTATTGGTTATGCATCAATGGCTATAATTGGTTACTTAATGTTTGGTTCAAAAGTTGACCCACAAGTAACATTAAACTTACCACTAAACAAAATGAGTTCAAGAATAGCAATATACACAACTTTGGTTAATCCAATAACCAAATTTGCTTTGATGGCAACACCTATTACAAATGCTTTGAAAGATTTACTTCCAATGACATACAAGAATAACAAAGTGACCAACATCTTTGTTAGTACTATTCTTGTAATTAGCACTGTAATTGTTGCATTATGTGTTCCTTTCTTTGGTTCTCTCATGTCATTGGTTGGAGCATTTTTAAGTGTCACTGCCTCTATTTTGCTTCCTTGTTTGTGCTACTTGAGGATTTCTGGCACTTATAGGAAATTTGGGTTTGAGACATTTGTTATAGTGGTAATAATATTAGTAGCTATAGTGATGGGAATATCTGGGACATATACTTCAGTTGTTGAAATAGTACAAAATTTGTAA 1287 0.3419 MEGEGDKWQQLCDEDVALNIPLIGAEHEGSNGHNNNVTTSFLKTCFNGLNALSGVGILSVPYALASGGWLSLAILFSIAAVAFYSGILMKRCMEKNSNIRTYPDIGELAFGKTGRLIVSISMYTELYLVSIGFLILEGDNLSNLFPIEEFQVVGLSIGSKHFFVILVALIILPTIWLDNLSLLSYVSASGVFASIIIILSISWTGAFDGVGFDQKGVIVNLNGIPTAVSLYAFCYCAHPVFPTLYNSMRNKHQFSNVLIVCFIITTIGYASMAIIGYLMFGSKVDPQVTLNLPLNKMSSRIAIYTTLVNPITKFALMATPITNALKDLLPMTYKNNKVTNIFVSTILVISTVIVALCVPFFGSLMSLVGAFLSVTASILLPCLCYLRISGTYRKFGFETFVIVVIILVAIVMGISGTYTSVVEIVQNL* 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g3160 428 PANTHER OS05G0424000 PROTEIN-RELATED 39 425 - -
Tpr6g3160 428 Pfam Transmembrane amino acid transporter protein 38 418 IPR013057 -
Tpr6g3160 428 PANTHER AMINO ACID TRANSPORTER AVT1J 39 425 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g3160 Tpr-Chr6 34093410 34099504 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g3160 26 425 Amino Acid or Auxin Permease AAAP Family AT3G28960 57.357 1.34e-170 482
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g3160 K15015 - gmx:100794374 627.861
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr6g3160 6 34093410 34099504 Tpr6g3160 6 34093410 34099504 ECH