Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g3150 ATGTCAACATCAACCCAACACCAGTTCCGATACACTCAAACCCCTTCCAAGGTTCTTCATCTTCGCAATCTTCCATGGGAGTGTTCAGAAGAGGAACTCATTGAACTTTGTAATCCCTTCGGTAGAATCATCAATACCAAATGCAATGTCGGCGCTAATCGTAATCAAGCCTTTGTTGAATTCGTGGATCAAAATCAAGCAATTTCAATGGTTTCATATTATGCTTCATCTTCAGAGCCTGCTCAGGTTCGTGGTAAAACTGTTTACATACAGTATTCCAATAGACACGAAATTGTCAACAACAAAAGCCCTGGAGATATTCCTGGAAATGTCTTGCTGGTAACTATTGAAGGCGTGGAAGCCGGGGATGTGAGCATTGATGTTATCCACTTGGTGTTTTCTGCTTTTGGCTTTGTTCATAAAATTGCTACATTTGAAAAGACCGCTGGTTTCCAGGCTCTGATTCAGTTCACTGATGCTGATACTGCTGCTTCAGCTAGGGATGCACTGGATGGAAGAAGCATACCAAGATACCTGCTTCCAGATCATGTTGGTTCTTGTAATTTGCGTATTTCATATTCAGCACATAAAGATCTAAATATCAAATTTCAATCCAATCGTAGCAGGGACTATACAAATCCTATGCTTCCTGTCAATCATAGTGCTATTGAGGGGGCAGCACAGCCTGTTATTGGTCCCGATGGAAAGAGGAGAGAACCGGAGAGCAATGTACTTTTGGCTTCCATTGAAAATATGCAGTATGCTGTTACTGTTGACGTCATCAACACGGTTTTTTCTGCATTTGGTACTGTCCAGAAAATTGCCATGTTCGAAAAGAATGGTCAAACTCAGGCACTAATTCAGTACCCAGATGTTACGACGGCAGCAGCTGCTAGAGAAGCTTTAGAGGGGCATTGCATATATGATGGTGGCTATTGTAAGCTTCATCTATCATACTCTCGTCATACTGATCTCAATGTAAAGGCTTTCAGTGACAAAAGTAGAGACTACACAGTACCACAAGTTCCTGTAACAGCTTGGCAAAATCCTCAGGCTGCACCTATGTACCCAACCAGTTCCCCTGGTTTTCAGACTCAAGTTCCTGGAGGACAAGGGCCATCATGGGATCTAACTCAGCATGCAGTTAGACCGGGTTATGTACCTGTTCCCGGTGCTTATCCTGTTCAAAATGGTGCATATCCTACTATGCCCGCCTACGCGTCCGCAGCTATGCCTACCGCTTCCTCGCCTCTTGCTCAAAGCAGCCATCCCGGGGTTCCACACAATGTAAATTTACAGCCTAGTGGTGGTTCAACTTCCGGTCCTGGTTCCTCGCCTCACATGCAAACCAGCTTTGGTGCTCAAGGATTGGTTCGGCCTGGGGTGCAGCCAAATGCGAGACCTGGTGGTGATTCACCTTCAGGTCAGCATTATTATGGTTAG 1443 0.4484 MSTSTQHQFRYTQTPSKVLHLRNLPWECSEEELIELCNPFGRIINTKCNVGANRNQAFVEFVDQNQAISMVSYYASSSEPAQVRGKTVYIQYSNRHEIVNNKSPGDIPGNVLLVTIEGVEAGDVSIDVIHLVFSAFGFVHKIATFEKTAGFQALIQFTDADTAASARDALDGRSIPRYLLPDHVGSCNLRISYSAHKDLNIKFQSNRSRDYTNPMLPVNHSAIEGAAQPVIGPDGKRREPESNVLLASIENMQYAVTVDVINTVFSAFGTVQKIAMFEKNGQTQALIQYPDVTTAAAAREALEGHCIYDGGYCKLHLSYSRHTDLNVKAFSDKSRDYTVPQVPVTAWQNPQAAPMYPTSSPGFQTQVPGGQGPSWDLTQHAVRPGYVPVPGAYPVQNGAYPTMPAYASAAMPTASSPLAQSSHPGVPHNVNLQPSGGSTSGPGSSPHMQTSFGAQGLVRPGVQPNARPGGDSPSGQHYYG* 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g3150 480 PANTHER OS02G0789700 PROTEIN 2 457 - -
Tpr6g3150 480 MobiDBLite consensus disorder prediction 436 480 - -
Tpr6g3150 480 SUPERFAMILY RNA-binding domain, RBD 248 343 IPR035979 GO:0003676
Tpr6g3150 480 CDD RRM3_PTBPH1_PTBPH2 242 338 IPR034794 -
Tpr6g3150 480 CDD RRM2_PTBPH1_PTBPH2 109 203 IPR034793 -
Tpr6g3150 480 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 17 95 IPR000504 GO:0003723
Tpr6g3150 480 SMART rrm1_1 246 316 IPR000504 GO:0003723
Tpr6g3150 480 SMART rrm1_1 18 91 IPR000504 GO:0003723
Tpr6g3150 480 SUPERFAMILY RNA-binding domain, RBD 5 106 IPR035979 GO:0003676
Tpr6g3150 480 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 21 71 IPR000504 GO:0003723
Tpr6g3150 480 MobiDBLite consensus disorder prediction 436 452 - -
Tpr6g3150 480 PANTHER MATRIN 3/NUCLEAR PROTEIN 220-RELATED 2 457 - -
Tpr6g3150 480 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 109 175 - -
Tpr6g3150 480 Pfam RRM-like domain 242 320 IPR021790 -
Tpr6g3150 480 Gene3D - 109 221 IPR012677 -
Tpr6g3150 480 Gene3D - 241 346 IPR012677 -
Tpr6g3150 480 CDD RRM1_PTBPH1_PTBPH2 15 95 IPR034792 -
Tpr6g3150 480 SUPERFAMILY RNA-binding domain, RBD 112 209 IPR035979 GO:0003676
Tpr6g3150 480 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 242 322 IPR000504 GO:0003723
Tpr6g3150 480 Gene3D - 3 105 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g3150 Tpr-Chr6 34006513 34013605 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g3150 212 308 Eukaryotic Initiation Factors Gene Family AT3G16380 25.490 4.55e-07 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g3150 K14948 - gmx:100792308 795.423
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr6g3150 6 34006513 34013605 Tpr6g3150 6 34006513 34013605 ECH