Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g3145 ATGAGACCATATGATAATGCTTTAAAACATAAAATGGATAATGAAAAGTTTAAACTTCCGGTTGGTTTTCGATTTCATCCGACTGATGAAGAGCTTATAAATCAATACCTTGTCAACAAGGTTAATGATGATAGCTTCTCTGCTCTAGCTATCGCAGAGATAGATATGAATAAGTGTGAACCATGGGATTTGGCCGAGTCAGCTAAAATTGGAGAAACAGAATGGTATTTTTTCTGTGTGAGGGATAGAAAATACCCAACCGGTCAAAGGACAAACAGGGCTACTAATGCTGGATACTGGAAGGCCACTGGCAAAGACAAAGAGATTATCAAGGGCAATCGATTAATTGGGATGAAGAAAACACTGGTTTTCTACAAAGGAAGAGCTCCAAGAGGTGAAAAAACCAATTGGGTCATGCATGAATACAGATTAGAGGGAAGTAACACAGTTCCTACGCAGAATCTCTCCAAACAAGGAACGGGTGAATGGGTTATATCTAGAGTCTATGTGAAGGGAAATTGTGGAAAGAAAATGCATGGTAATTCAAAAAAACTTGGAAGGTTTAACTCTTCAAGTGAAGGACCATCAAATGCTAATGAATCTCTATTGCCTCAATTGATGGATTCTTCATTCAATAATGAAACAAAAACTACTTTTGGTGATTTTTCGCATGTCCTCAACTCCTTCTCTGTTCAGAATGAAACCATGAACATTCCGTCCTCTGCGAAACAATTTGGTGCTGAACCAGCACAAAATTGTTTCTTGTCTCAACAAGAATCCATGTTGAGGATGCAAATGGAGAATGAAAATATTGGAACAAGTTCAAAGCAAAATGTGAAACAAGATTTTTCTTTAGTGAGAGATTACTTTGATGGTGATATATCTTCTGTAGTGTATGGAAATAACATGTTTCAAAGGTGGTATGGGAATCAAGAATTTGCTTCAACTTCTACTGAGCCTGTGGTGACTGATAGCTTGTGGAATTATTGA 990 0.3737 MRPYDNALKHKMDNEKFKLPVGFRFHPTDEELINQYLVNKVNDDSFSALAIAEIDMNKCEPWDLAESAKIGETEWYFFCVRDRKYPTGQRTNRATNAGYWKATGKDKEIIKGNRLIGMKKTLVFYKGRAPRGEKTNWVMHEYRLEGSNTVPTQNLSKQGTGEWVISRVYVKGNCGKKMHGNSKKLGRFNSSSEGPSNANESLLPQLMDSSFNNETKTTFGDFSHVLNSFSVQNETMNIPSSAKQFGAEPAQNCFLSQQESMLRMQMENENIGTSSKQNVKQDFSLVRDYFDGDISSVVYGNNMFQRWYGNQEFASTSTEPVVTDSLWNY* 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g3145 329 SUPERFAMILY NAC domain 16 171 IPR036093 GO:0003677|GO:0006355
Tpr6g3145 329 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 8 326 - -
Tpr6g3145 329 PANTHER ANAC079/ANAC080/ATNAC4 PROTEIN 8 326 - -
Tpr6g3145 329 Gene3D NAC domain 28 175 IPR036093 GO:0003677|GO:0006355
Tpr6g3145 329 ProSiteProfiles NAC domain profile. 19 171 IPR003441 GO:0003677|GO:0006355
Tpr6g3145 329 Pfam No apical meristem (NAM) protein 20 144 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g3145 Tpr-Chr6 33978376 33980462 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g3145 19 329 NAC Transcription Factor Family AT5G07680 49.398 2.01e-87 263
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Tpr6g3145 NAM 1.9e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g3145 - - cam:101488836 421.009