Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g3143 ATGGGAAGATCACCATGTTGTGAAAAAGTTGGTTTGAAAAAAGGACCATGGACACCTGAGGAAGATCAAAAGCTCTTATCTTACATTGAAGAACATGGTCATGGAAGTTGGCGTGCTCTTCCTACAAAAGCTGGACTTGAGAGGTGTGGCAAAAGTTGTAGATTGAGATGGACTAATTATCTAAGGCCTGATATTAAGAGGGGAAAGTTTACTTCACAAGAAGAACATACCATTATTCAACTTCATGCACTATTAGGCAACAGGTGGTCAGCAATAGCCACACATTTACCTAAGAGAACAGATAATGAAATCAAGAACTATTGGAACACACATCTTAAGAAAAGGTTAATAAAACATGGAATTGATCCTATTACACACAAACCAAAAAATGAAACCCTTTCCTCTGATAATCATTCCAAGAATGTTGCAAATCTTAGCCACATGGCTCAATGGGAAAGTGCAAGACTTGAAGCTGAAGCAAGATTGGTTAGAGAATCAAAGCTACGTACACAATATTCAGTGCAAATTGGAAATAATAATTCTATTTTTCCATCACAATCTTCATCATCTGCATCATCATCTTCAAATCAAGTACTTAATAATATTAAAGAAGAAGGTGAGAAAGAGTGGAAAGGTTATAATGAAGATTCAACACATTTGTTAGAATTCAAAGAAGTGATGGAGAATTCATCAATGGCTTTTACTTCTACAATGATTAATGTTGCTGAGGATGGTTTCACTAATCTCTTGCTCGATAATTCTAACTCCGGTGATCCGAGTTTGTCACCGGAGAGTGGTGTAGAGTGTAATACTTGTGATGGAAGTGGTAGTGGCGGTGGCAATGGTGGTGGAAGTGATTTCTACGAAGACAACAAGAACTACTGGAACAACATTCTTAATTTAGTCAACTCTTCACCTTCTGATTCGCCGATTTTCTAA 939 0.3717 MGRSPCCEKVGLKKGPWTPEEDQKLLSYIEEHGHGSWRALPTKAGLERCGKSCRLRWTNYLRPDIKRGKFTSQEEHTIIQLHALLGNRWSAIATHLPKRTDNEIKNYWNTHLKKRLIKHGIDPITHKPKNETLSSDNHSKNVANLSHMAQWESARLEAEARLVRESKLRTQYSVQIGNNNSIFPSQSSSSASSSSNQVLNNIKEEGEKEWKGYNEDSTHLLEFKEVMENSSMAFTSTMINVAEDGFTNLLLDNSNSGDPSLSPESGVECNTCDGSGSGGGNGGGSDFYEDNKNYWNNILNLVNSSPSDSPIF* 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g3143 312 CDD SANT 69 112 IPR001005 -
Tpr6g3143 312 Gene3D - 13 66 - -
Tpr6g3143 312 PANTHER MYB TRANSCRIPTION FACTOR MIXTA-LIKE PROTEIN 194 308 - -
Tpr6g3143 312 PANTHER MYB TRANSCRIPTION FACTOR MIXTA-LIKE PROTEIN 1 189 - -
Tpr6g3143 312 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Tpr6g3143 312 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Tpr6g3143 312 CDD SANT 16 61 IPR001005 -
Tpr6g3143 312 Gene3D - 69 116 - -
Tpr6g3143 312 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Tpr6g3143 312 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Tpr6g3143 312 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Tpr6g3143 312 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Tpr6g3143 312 SMART sant 66 114 IPR001005 -
Tpr6g3143 312 SMART sant 13 63 IPR001005 -
Tpr6g3143 312 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Tpr6g3143 312 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 194 308 - -
Tpr6g3143 312 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 189 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g3143 Tpr-Chr6 33946959 33949998 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g3143 1 312 MYB Transcription Factor Family AT3G01140 56.267 1.90e-120 348
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Tpr6g3143 Myb_DNA-binding 1.1e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g3143 K09422 - gmx:100781637 402.519