Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g3140 ATGCAACATTCATCAAGTGATGTGGTAGAATCATCAAGTTTGAGAAAAGGGGCATGGACTAAATTTGAAGATGAGCTTCTCAAAGATTGTATTCAACGTTATGGGGTGGGGAAATGGCACTTAGTTCCTCAAAGAGCAGGATTGAAAAGATGCCGCAAGAGTTGTAGAATGAGATGGTTGAACTATCTAAACCCAAATATCAAGAGGGGAGAATTTAGTGAAGATGAAGTTGATTTGATGATCAAATTGCACAATCTTTTAGGAAACAGATGGTCCTTAATTGCTGGAAGACTTCCCGGAAGAACTTCAAACGATGTGAAAAATTATTGGAACACCTACATGCGTAGCAAAAAAGAGAAGAACAAAATGAAGGAAAAAATAGAAACAATGAAACCACATGAAGTGATAAAGCCTCAACCACGAACTTTTTCAAAACCAATGTTGGAATTGAATAAATTTATTGCCTCAAATGATCATAGTTGTTCCAAAGTTAATATGAATGAAGAATTAGGTGCAACTTCATCAGGAACATGCAATTGGTGGAAAACTTTGTTATTCGATGACAATGAAGATCATAACAATCACTTATGTGAAATGGACTTTTGGGATGATCAAGAGCTTAATTCAAGAATAAATTCTTTTGACTTTCTTGAAAGTCAAACTTGGAGTGATTTTCTTGCTCAAATTTGA 690 0.3493 MQHSSSDVVESSSLRKGAWTKFEDELLKDCIQRYGVGKWHLVPQRAGLKRCRKSCRMRWLNYLNPNIKRGEFSEDEVDLMIKLHNLLGNRWSLIAGRLPGRTSNDVKNYWNTYMRSKKEKNKMKEKIETMKPHEVIKPQPRTFSKPMLELNKFIASNDHSCSKVNMNEELGATSSGTCNWWKTLLFDDNEDHNNHLCEMDFWDDQELNSRINSFDFLESQTWSDFLAQI* 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g3140 229 Gene3D - 71 139 - -
Tpr6g3140 229 Pfam Myb-like DNA-binding domain 16 63 IPR001005 -
Tpr6g3140 229 Pfam Myb-like DNA-binding domain 69 113 IPR001005 -
Tpr6g3140 229 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 11 63 IPR017930 -
Tpr6g3140 229 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 64 118 IPR017930 -
Tpr6g3140 229 SUPERFAMILY Homeodomain-like 14 110 IPR009057 -
Tpr6g3140 229 CDD SANT 71 114 IPR001005 -
Tpr6g3140 229 Gene3D - 16 68 - -
Tpr6g3140 229 ProSiteProfiles Myb-like domain profile. 64 114 IPR001005 -
Tpr6g3140 229 PANTHER TRANSCRIPTION FACTOR MYB113-RELATED 13 167 - -
Tpr6g3140 229 CDD SANT 18 63 IPR001005 -
Tpr6g3140 229 ProSiteProfiles Myb-like domain profile. 11 63 IPR001005 -
Tpr6g3140 229 SMART sant 68 116 IPR001005 -
Tpr6g3140 229 SMART sant 15 65 IPR001005 -
Tpr6g3140 229 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 13 167 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g3140 Tpr-Chr6 33925420 33926807 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g3140 13 188 MYB Transcription Factor Family AT1G66370 48.058 2.90e-57 180
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Tpr6g3140 Myb_DNA-binding 5.4e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g3140 - K16166 gmx:100781091 256.914