Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g3131 ATGGCAGCTTGTGTATTCACCGTTTCACAAGACGGTTCCGGAGATTTTCAAACGGTGCAAGAAGCAATCGACGCCGTACCTTTCGGTAACACACGACGGACTGTGATCCGGGTTTCTCCCGGAATTTACCGGCAACCGGTGTACGTTGCTAAAACTAAGAATTTCATCACTCTTGCTGGGTTGGGTCCTGAGGATACTGTGCTTACTTGGAATAACACTGCCACCAAAATCGAACACCATCAACCTGCTAGGGTGATTGGGACTGGGACTTTTGGTTGTGGAACTGCCATTGTGGAAGGAGAGGACTTCATTGCAGATAACATTACTTTTGAGAATTCGTCCCCCCAGGGTTCAGGACAGGCGGTGGCAATTAGAGTAACAGCAGATCGTTGTGCCTTCTATAATTGCAGGTTCCTTGGATGGCAGGACACACTGTATTTACATTACGGTAAACAATATTTGAAAGATTGCTATATTGAAGGAAGCGTGGACTTCATCTTTGGCAATAGCACTGCCCTTTTGGAGCACTGTCATATACACTGCAAGAGTGAAGGGTTCATAACCGCACAGGGTAGAAAATCATCACAGGAATCAACTGGTTATGTATTCTTGAGATGTGTTATCACAGGTAATGGAGGAAATTCATATGCGTATCTTGGACGACCGTGGGGACCTTTTGGAAGGGTGGTCTTTGCATACACTTACATGGATCCATGTATTAGACAAGTTGGTTGGGATAACTGGGGGAAAGTAGAGAATGAGAGGAGTGCTTGCTTTTACGAATACAGGTGTTTTGGACCTGGTTGCTGTCCAACCGATCGAGTAACATGGTGTAGAGAATTGGTGGATGAAGAAGCAGAGCAATTCATCATGCATCCATTCATTGATCCAGAACCAGATAGATCTTGGCTTGCTCAAAGAATGGGCTTGAGGGTTCCATATTCTGCTTAG 951 0.4532 MAACVFTVSQDGSGDFQTVQEAIDAVPFGNTRRTVIRVSPGIYRQPVYVAKTKNFITLAGLGPEDTVLTWNNTATKIEHHQPARVIGTGTFGCGTAIVEGEDFIADNITFENSSPQGSGQAVAIRVTADRCAFYNCRFLGWQDTLYLHYGKQYLKDCYIEGSVDFIFGNSTALLEHCHIHCKSEGFITAQGRKSSQESTGYVFLRCVITGNGGNSYAYLGRPWGPFGRVVFAYTYMDPCIRQVGWDNWGKVENERSACFYEYRCFGPGCCPTDRVTWCRELVDEEAEQFIMHPFIDPEPDRSWLAQRMGLRVPYSA* 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g3131 316 SUPERFAMILY Pectin lyase-like 2 299 IPR011050 -
Tpr6g3131 316 Pfam Pectinesterase 7 296 IPR000070 GO:0030599|GO:0042545
Tpr6g3131 316 PANTHER PECTINESTERASE 1 315 - -
Tpr6g3131 316 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 1 315 - -
Tpr6g3131 316 ProSitePatterns Pectinesterase signature 2. 159 168 IPR033131 -
Tpr6g3131 316 Gene3D - 3 310 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g3131 Tpr-Chr6 33856036 33860717 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g3131 5 307 Carbohydrate Esterase AT5G47500 38.978 7.46e-70 219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g3131 K01051 - gmx:100795636 619.772
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr6g3131 6 33856036 33860717 Tpr6g3131 6 33856036 33860717 ECH