Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g3125 ATGTCAACCACCAACCCTTCCGACACCGACACGGCGTCACCACCACCAACACGACCAACAATCACCCTCCCACCACGTCCTTCCGTCGAAGCATTTTTCGCCGGTGCCGCTAGTCCTGGACCCATGACACTAGTTTCAAGCTTCTTCGCCACCGAATCCGCCACCTTCTCTCAACTACTCGCCGGAGCTATGGCTTCTCCTCTTGCTTTCTCTTCCTCTTCTTCCGGTGACTTTATTTCCGGTAAAGATGATGATGGGTCTAATAGAAACATGGGTTTCAAACAAAGTAGACCTATGAACTTAGTCATTGCTCGTTCACCTGTTTTCACTGTTCCTCCTGGTTTGAGTCCTTCTGGTTTTCTTAACTCTCCTGGGTTTTTTTCTCCTCAGAGTCCCTTTGGAATGTCACACCAACAGGCTTTAGCACAGGTTACAGCTCAAGCTGTCCTAGCACAATCTCATAATATGCACATGCAACCTGAATACCAGCAGGTCTCATTAGAACCTCACACCGAACAACGTGTAGAGCAGCCATCTTATACTCTAAGTGAAGCTTCAGAGCAGCAAATGGTAGTACATGCATCAGAACCTAGAAATACTCAAATGGAAACGTCGGAGATTTCACATTCTGATAAGAAATATCAACCAGCATCTCTACCTATTGACAAACCTGCAGATGATGGCTACAACTGGCGTAAGTATGGACAGAAGCAGGTTAAGGGGAGCGAGTATCCACGAAGCTACTACAAATGCACGCATCTGAATTGTCCTGTGAAGAAAAAAGTTGAGCGTGCCCCTGATGGTCATATAACTGAAATCATCTATAAGGGCCAACATAACCACGATAAGCCTCAGGCGAATAAGCGTTCCAAAGAAAATAGTGATGTGAATGGAAATGCAAATGTTCAACCTAAGTCTGACTCAAACTCACAAGGTTGGTATGGAAATTCGAACAAAATTAGTGAAAGTGTACCCGATTCTTCGGTGCCTGAGCCTGAGAATGACCCGACCTCCAATCAAGGGGCTCTCCTACCATGGCCTGGAACGAGTGAGAGTGAGGAAGTCGGTGATGCAGGCAATAAGGAAGGCGGAGATGGTGTTGAGCCAAACCCTAAGAGAAGGAACATTGAGCCTGCGGTTCCTGAAGTACCTCCGTCTCAGAAGACTGTCACAGAACCCAAAATCATTGTGCAAACAAGAAGTGAAGTTGATCTTTTGGATGATGGCTATAGGTGGAGAAAATATGGTCAGAAAGTAGTGAAGGGAAATCCTCATCCAAGGAGCTATTACAAGTGCACTAGTGCAGGATGCAACGTGCGTAAACATGTTGAAAGAGCTTCAACAGACCCAAAAGCTGTCATAACAACGTACGAGGGAAAACATAATCACGATGTCCCTGCTGCTAGAAACAGCAGCCACAACACAGCTAATAGTAATTCAATGCTATCAAAACCACAAACTGTGGCGCCGGAGAAGCACCCTTTGCTTAAAGATATGGAGTTCGGAAACAATGATCAAAGACCTGTACATTTACGCTTAAAAGAAGAGCAAATCATTGTATAA 1563 0.4536 MSTTNPSDTDTASPPPTRPTITLPPRPSVEAFFAGAASPGPMTLVSSFFATESATFSQLLAGAMASPLAFSSSSSGDFISGKDDDGSNRNMGFKQSRPMNLVIARSPVFTVPPGLSPSGFLNSPGFFSPQSPFGMSHQQALAQVTAQAVLAQSHNMHMQPEYQQVSLEPHTEQRVEQPSYTLSEASEQQMVVHASEPRNTQMETSEISHSDKKYQPASLPIDKPADDGYNWRKYGQKQVKGSEYPRSYYKCTHLNCPVKKKVERAPDGHITEIIYKGQHNHDKPQANKRSKENSDVNGNANVQPKSDSNSQGWYGNSNKISESVPDSSVPEPENDPTSNQGALLPWPGTSESEEVGDAGNKEGGDGVEPNPKRRNIEPAVPEVPPSQKTVTEPKIIVQTRSEVDLLDDGYRWRKYGQKVVKGNPHPRSYYKCTSAGCNVRKHVERASTDPKAVITTYEGKHNHDVPAARNSSHNTANSNSMLSKPQTVAPEKHPLLKDMEFGNNDQRPVHLRLKEEQIIV* 521
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g3125 520 SMART WRKY_cls 406 465 IPR003657 GO:0003700|GO:0006355|GO:0043565
Tpr6g3125 520 SMART WRKY_cls 225 283 IPR003657 GO:0003700|GO:0006355|GO:0043565
Tpr6g3125 520 MobiDBLite consensus disorder prediction 355 372 - -
Tpr6g3125 520 MobiDBLite consensus disorder prediction 269 290 - -
Tpr6g3125 520 SUPERFAMILY WRKY DNA-binding domain 224 284 IPR036576 GO:0003700|GO:0006355|GO:0043565
Tpr6g3125 520 ProSiteProfiles WRKY domain profile. 226 284 IPR003657 GO:0003700|GO:0006355|GO:0043565
Tpr6g3125 520 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 13 519 IPR044810 GO:0003700
Tpr6g3125 520 MobiDBLite consensus disorder prediction 1 16 - -
Tpr6g3125 520 ProSiteProfiles WRKY domain profile. 401 466 IPR003657 GO:0003700|GO:0006355|GO:0043565
Tpr6g3125 520 Pfam WRKY DNA -binding domain 226 281 IPR003657 GO:0003700|GO:0006355|GO:0043565
Tpr6g3125 520 Pfam WRKY DNA -binding domain 407 463 IPR003657 GO:0003700|GO:0006355|GO:0043565
Tpr6g3125 520 MobiDBLite consensus disorder prediction 469 488 - -
Tpr6g3125 520 MobiDBLite consensus disorder prediction 196 225 - -
Tpr6g3125 520 SUPERFAMILY WRKY DNA-binding domain 398 466 IPR036576 GO:0003700|GO:0006355|GO:0043565
Tpr6g3125 520 MobiDBLite consensus disorder prediction 269 389 - -
Tpr6g3125 520 MobiDBLite consensus disorder prediction 1 27 - -
Tpr6g3125 520 Gene3D WRKY domain 391 467 IPR036576 GO:0003700|GO:0006355|GO:0043565
Tpr6g3125 520 Gene3D WRKY domain 217 285 IPR036576 GO:0003700|GO:0006355|GO:0043565
Tpr6g3125 520 MobiDBLite consensus disorder prediction 469 486 - -
Tpr6g3125 520 MobiDBLite consensus disorder prediction 291 346 - -
Tpr6g3125 520 PANTHER WRKY PROTEIN 13 519 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g3125 Tpr-Chr6 33788060 33793866 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g3125 17 518 WRKY Transcription Factor Family AT2G03340 51.873 1.54e-142 418
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Tpr6g3125 WRKY 1e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g3125 - - gmx:100796679 773.852
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr6g3125 6 33788060 33793866 Tpr6g3125 6 33788060 33793866 ECH