Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g3119 ATGAGTTCCTATTCCAATGAGAAACAAAACCATGTTGGGGAAACTCAAACCCCACAAATAGAAGACAGTGATACACTTTCTGCCTTGGTACTAGGTGCCAATTTGGTTTTTCCAGCTGTTCTTAATGCTGCAATTAAGCTCAACTTGTTTGAAATCATTGCTAAAGAAAGTTCACTAGATAACGGTGGATTCTTATCAGCTTTTGAAATTGCTTCAAAGTTACCAACTCAACACTCTGACTTACCGAATAGGCTCGATCGTATGTTGCGCTTGCTTGCTAGTTACTCTCTTCTGTCTGTTTCTACTCGGACCAATGACGATGGTAGCATCGTAAGAGTTTATGCGATCACCCCGTCGGGTAAATATTTTTCTTATGACGAAAATAGTGATCATGGTTATCTTGGCTACTTCACATCATTTATGTGTCACCCTGCTTTGATAGGGTTGTGGTTAAATTTCAAGGAAGCAGTGGTTGATCCAGAGGTTGACTTATTCAAGAAAGTCAATGGAATTACCAAGTATGAGTACATGGGGAAAGATCCACAATTGAACCAAATATTCAACAACTCAATGACTAATGGAACCAAAATTCACATGAAAAAAATCCTTGAAATATACAAAGGATATGAGGGAGTCTCAACTTTGGTTGATGTAGGTGGTGGAAATGGACAAACTCTCAAAATGATTATTGAAAAATATCCATCAATAAAGGGAGTCAATTTTGATCTCCCTCAAGTGATTGAAAATGTCTCACTAATTCCAGGGATTGAGCATGTTGGAGGAAGTATGTTTGAAAGTATTCCACAAGGAGATGCCATAATGATGAAGAGTGTATGCCATAATTGGTCAGATGAAAAATGCATAGAAATTTTTAGCAATTGTCACAAAGCTTTGCCTCAAAATGGAAAGGTCATACTTGTGGAGCTTTTATTGCCAGAATGTCCAGAAGCAACAGATGCATCTCGAATGATTTCAATTGTTGATAATATCATGTTCATCAATGCTGGTGGAAAAGAAAGAACTGCAAAAGAATATGAAAGTTTGGCTCAACAATCTGGATTTTCAAGACTTGAAGTTGTTTCTTGTGCTTTCTCTATTTTAGGAGTGATGGAAATTTACAAATAA 1125 0.3698 MSSYSNEKQNHVGETQTPQIEDSDTLSALVLGANLVFPAVLNAAIKLNLFEIIAKESSLDNGGFLSAFEIASKLPTQHSDLPNRLDRMLRLLASYSLLSVSTRTNDDGSIVRVYAITPSGKYFSYDENSDHGYLGYFTSFMCHPALIGLWLNFKEAVVDPEVDLFKKVNGITKYEYMGKDPQLNQIFNNSMTNGTKIHMKKILEIYKGYEGVSTLVDVGGGNGQTLKMIIEKYPSIKGVNFDLPQVIENVSLIPGIEHVGGSMFESIPQGDAIMMKSVCHNWSDEKCIEIFSNCHKALPQNGKVILVELLLPECPEATDASRMISIVDNIMFINAGGKERTAKEYESLAQQSGFSRLEVVSCAFSILGVMEIYK* 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g3119 374 PIRSF O-mtase 5 374 IPR016461 GO:0008168
Tpr6g3119 374 Pfam O-methyltransferase domain 150 355 IPR001077 GO:0008171
Tpr6g3119 374 PANTHER O-METHYLTRANSFERASE 1 374 IPR016461 GO:0008168
Tpr6g3119 374 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 29 374 IPR016461 GO:0008168
Tpr6g3119 374 Gene3D Vaccinia Virus protein VP39 127 374 IPR029063 -
Tpr6g3119 374 Pfam Dimerisation domain 40 93 IPR012967 GO:0046983
Tpr6g3119 374 Gene3D - 4 123 IPR036388 -
Tpr6g3119 374 SUPERFAMILY "Winged helix" DNA-binding domain 26 127 IPR036390 -
Tpr6g3119 374 PANTHER CAFFEIC ACID O-METHYLTRANSFERASE 1 374 - -
Tpr6g3119 374 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 130 371 IPR029063 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g3119 Tpr-Chr6 33740802 33745417 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g3119 12 366 Monolignol Biosynthesis Gene Families AT5G54160 47.383 4.34e-113 332
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g3119 - - gmx:100798295 522.316