Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g3116 ATGCCCACCTTCTTCTCTCTCCCTAGGTGGATTGGTGGAAAATTGTTTGGAAAGAATCCTAAGAGTACAATCAATAATGTTGGTGACAGCGGTGATGACACTGGAGTTGCTGTCATAACTGACGACAATCCAGTGACAAGCGTGGTGGAGTGTTACGCCTGCACACAAGTTGGTGTGCCAGTGTTCCACTCCACCAGCTGCGATAGCTATCAACAACCAGAATGGGAAGCATCAGCAGGTTCATACTTAGTTCCAATACAAAACCGTCCCGGAAAATTCGCAAGAGCGGTCACAGGGGCAAATTGGGGACCTTTAGGAAAAGTTTTAGATCCAAGAAGCAAGCGTGTGCAAATATGGAACCGCGCATTGTTATTGGCACGTGGTGTTGCCTTGGCGATTGATCCGTTGTTTTTCTACGCGCTGTCTATAGGGAGAGGAGGCTCGCCGTGTTTGTATATGGACGGTGGTTTGGCGTTGGTTGTTACGGTGGCGCGTTCGGTTGTTGACGCGGTTCATTTGTTTCATGTTGTGTTGCAGTTTAGATTAGCGTATGTGTCAAGAGAGTCGCTTGTTGTTGGATGTGGGAAACTCGTGTGGGACGCACGCGCCATTGCTTCTCATTATATGAGATCTTTCAAAGGATTTTGGTTTGATATTTTTGTTATTCTTCCTCTGCCTCAGGTTGTATTTTGGGCAGTAGTACCAAAATTGATAAGAGAAGATAGGATTAAAATAATTATGACAACAATGCTATTGCTTTTTTTGTTCCAATTTCTCCCTAAGGTTTACCATAGCATATCCATGATGAGAAGAATGCAAAAAGTCACCGGCTATATCTTTGGCACTATTTGGTGGGGATTTGGACTCAATCTCATAGCTTATTTCATTGCCTCTCATGTTGCTGGAGGGTGTTGGTATGTCCTTGCGATTCAACGCGTTGCATCATGCCTACAACAGCAATGTGAAAGATCTGTTGGATGCAGTCTCCCTCTGTCATGCTCAGAGGAAATATGTTTTCAGTCATTGTTGCCACCGGGAACCATTGGAAATGCATGTGGTGGAAACTCAACAATGATGAGTAAGCCTGTGTGCTTAGATGTGGAAGGACCTTACAAATATGGGATCTATCAATGGGCACTTCCTGTCATATCCAGCAATTCCTTGGCTGTCAAGATTCTCTATCCAATTTTTTGGGGTTTGATGACCCTCAGCACTTTTGGAAATGATCTTGAACCCACAAGTAACTGGCTAGAAGTGATTTTCAGCATATGCATTGTACTCGCTGGACTACTACTTTTCACTCTGTTGATTGGTAACATCCAGGTATTCTTACATGCAGTCATGGCAAAGAAGAGAAAGATGCAGCTGAGATGTCGTGACATGGAATGGTGGATGAGGAGGAGGCAGTTGCCATCCCGATTAAGACAAAGAGTTCGGCATTTTGAACGTCAGAGATGGGCAGCTATGGGAGGAGAAGATGAGATGGAACTGATCAAAGACTTACCTGAGGGTCTGAGGAGAGACATCAAGCGCTATCTTTGCTTGGACCTCATTAAAAAGGTACCATTGTTCCATAACTTGGATGGTCTTATTCTTGACAACATTTGTGACAGAGTGAAGCCCCTAGTCTTCTCTAGAGATGAAAAGATAATTAGAGAAGGTGATCCTGTACCAAGGATGGTGTTTATTGTCCGTGGACGCATAAGGCGAACCCAAAATCTCAGCAAAGGCATGGTAGCAACAAGTGTCCTTGAACCAGGAGGCTTTTTAGGCGATGAACTTCTTTCATGGTGCCTTAGACGCCCTTTTATAGACCGGCTTCCGGCATCCTCAGCTACATTTGTGTGTCTCGAATCAACAGAAGCATTTGGTCTTGATGCTCAAAACTTGAGGTACATAACCGATCACTTCCGGTACAAATTCGCGAACGAGAGGCTTAAGAGAACAGCGAGATACTACTCATCGAATTGGAGAACATGGGCTGCTGTCAACATTCAACTTGCTTATAGACGTTACAGGCAGAGGACTAGAGGTCCAGTGACTCCTGTAAGGGACAACAATGGAGGCACCGAACGCAAACTCTTGCAGTATGCTGCAATGTTCATGTCAATTAGGCCACATGATCATCTCGAATGA 2136 0.4466 MPTFFSLPRWIGGKLFGKNPKSTINNVGDSGDDTGVAVITDDNPVTSVVECYACTQVGVPVFHSTSCDSYQQPEWEASAGSYLVPIQNRPGKFARAVTGANWGPLGKVLDPRSKRVQIWNRALLLARGVALAIDPLFFYALSIGRGGSPCLYMDGGLALVVTVARSVVDAVHLFHVVLQFRLAYVSRESLVVGCGKLVWDARAIASHYMRSFKGFWFDIFVILPLPQVVFWAVVPKLIREDRIKIIMTTMLLLFLFQFLPKVYHSISMMRRMQKVTGYIFGTIWWGFGLNLIAYFIASHVAGGCWYVLAIQRVASCLQQQCERSVGCSLPLSCSEEICFQSLLPPGTIGNACGGNSTMMSKPVCLDVEGPYKYGIYQWALPVISSNSLAVKILYPIFWGLMTLSTFGNDLEPTSNWLEVIFSICIVLAGLLLFTLLIGNIQVFLHAVMAKKRKMQLRCRDMEWWMRRRQLPSRLRQRVRHFERQRWAAMGGEDEMELIKDLPEGLRRDIKRYLCLDLIKKVPLFHNLDGLILDNICDRVKPLVFSRDEKIIREGDPVPRMVFIVRGRIRRTQNLSKGMVATSVLEPGGFLGDELLSWCLRRPFIDRLPASSATFVCLESTEAFGLDAQNLRYITDHFRYKFANERLKRTARYYSSNWRTWAAVNIQLAYRRYRQRTRGPVTPVRDNNGGTERKLLQYAAMFMSIRPHDHLE* 712
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g3116 711 SUPERFAMILY Voltage-gated potassium channels 110 444 - -
Tpr6g3116 711 Pfam Ion transport protein 117 441 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Tpr6g3116 711 ProSiteProfiles cAMP/cGMP binding motif profile. 523 633 IPR000595 -
Tpr6g3116 711 SMART cnmp_10 523 649 IPR000595 -
Tpr6g3116 711 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 54 711 - -
Tpr6g3116 711 Gene3D Jelly Rolls 521 639 IPR014710 -
Tpr6g3116 711 SUPERFAMILY cAMP-binding domain-like 450 637 IPR018490 -
Tpr6g3116 711 CDD CAP_ED 523 633 IPR000595 -
Tpr6g3116 711 Gene3D Helix hairpin bin 449 514 - -
Tpr6g3116 711 Gene3D - 150 446 - -
Tpr6g3116 711 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 2-LIKE 54 711 - -
Tpr6g3116 711 Pfam Cyclic nucleotide-binding domain 543 632 IPR000595 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g3116 Tpr-Chr6 33719121 33724731 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g3116 42 711 Ion Channels AT5G15410 76.100 0.0 1021
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g3116 K05391 - gmx:100798823 1209.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr6g3116 6 33719121 33724731 Tpr6g3116 6 33719121 33724731 ECH