Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g3070 ATGGCGTTCTTTGGTAAAATGGGGAAGTTACTTACGAATTCTGCTGTCAAGCAGATCAATCATGATTTGTCTATGTCTACTCCTTCAGTATTTCAAGCAATTAGATCAATGTCATCAGCAAAGCTTTTTGTTGGAGGTGTTTCATATAACACTGATGAGTCCGGTCTCCGAGACCATTTTGCTCGCTATGGAGAAGTTCTTGAAGCAAAAATTATCATGGATCGTGAAACAGGTAGATCCCGAGGTTTTGGTTTCATATCGTTTGCAACAGCCGAGGAGGCATCTGCTGCCCTTCAGGCTACGGATAACCAGGATCTTCATGGTCGGACATTACGAGTGAACTATGCTACAGAAAGGTCACGTCCTGGTTTTGGTGGCGGTGGTGGCTATGGTGGTGGCGGCGGTGGTTATGGTGGTGGCGGTGGAGGCTATGGTGGTGGCGGCGGCGGTTATGGTGGTGGCGGTGGAGGCTATGGCAGCGGCTATGGCGATGGTGGCTATGGCGGTAATACTTATGGTCGTAATGATAATAATAGTGGTGGACGCTATGGAGGTGGTGGTGATACTTATGCTGCTGGTGGTGAACAAAGCAATGACATCATTGAGCCATTTGAAAACAACCACGTTGCAGAGAACAATGATCAACCCGATGACTTCGCTGAGACCCGGAGGTGA 675 0.483 MAFFGKMGKLLTNSAVKQINHDLSMSTPSVFQAIRSMSSAKLFVGGVSYNTDESGLRDHFARYGEVLEAKIIMDRETGRSRGFGFISFATAEEASAALQATDNQDLHGRTLRVNYATERSRPGFGGGGGYGGGGGGYGGGGGGYGGGGGGYGGGGGGYGSGYGDGGYGGNTYGRNDNNSGGRYGGGGDTYAAGGEQSNDIIEPFENNHVAENNDQPDDFAETRR* 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g3070 224 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 40 118 IPR000504 GO:0003723
Tpr6g3070 224 MobiDBLite consensus disorder prediction 179 224 - -
Tpr6g3070 224 Gene3D - 12 138 IPR012677 -
Tpr6g3070 224 SMART rrm1_1 41 114 IPR000504 GO:0003723
Tpr6g3070 224 SUPERFAMILY RNA-binding domain, RBD 25 150 IPR035979 GO:0003676
Tpr6g3070 224 PRINTS Eggshell protein signature 36 52 - -
Tpr6g3070 224 PRINTS Eggshell protein signature 125 140 - -
Tpr6g3070 224 PRINTS Eggshell protein signature 151 161 - -
Tpr6g3070 224 PRINTS Eggshell protein signature 177 195 - -
Tpr6g3070 224 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN 3 MITOCHONDRIAL 1 161 - -
Tpr6g3070 224 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 42 112 IPR000504 GO:0003723
Tpr6g3070 224 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 1 161 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g3070 Tpr-Chr6 33338013 33350562 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g3070 33 126 C2H2 Transcription Factor Family AT2G19380 34.043 4.34e-12 63.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g3070 K12741 - gmx:100807155 191.43