LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Tpr6g3068	ATGGAACAAAGAAAAAATATCTTTGTTCATGTAGTGATTTTTTTGGTCATGGTCCTACTTAAGGGAAGTGCTAATGTTGTTGAAGGAAAAGGAGTGGCTGAAGAAGAAAAAGATAGGATTTTGGAGCTTCCTGGTCAACCTAAGGTTTTGTTTAAGCAATTTTCTGGCTATGTTACTGTTAATCATGAAGCTGGTAGAGCTCTTTTTTATTGGTTAACTGAAGCTCAACAAAATCCTCTCAACAAACCACTTGTCATTTGGCTTAATGGAGGTCCAGGTTGTTCATCAGTGGCATATGGAGCATCTGAAGAGATTGGCCCATTTAGATTAAACAAAACAACTTCTGGGCTTTACATTAACAAGTTTGCATGGAACACAGTGGCCAATCTTTTATTCTTGGAAGCTCCGGCAGGCGTCGGTTTCTCCTACACCAACCGCTCTTCCGACCTCCTTGACACTGGAGACCGCCGCACTGCCAAGGACTCTCTGGAATTTGTAATCCAGTGGCTTGAAAGATTCCCACGTTACAAGAATAGGGAACTTTATATAACAGGAGAGAGTTATGCAGGACACTATGTCCCTCAATTAGCTAAGGAAATCATGACATATAACATAAAAGCCAAGCAACCTATCAATCTCAAGGGCATAATGGTTGGGAATGCAGTGACAGACAACTATTATGATAACTTAGGCACAGTGACATACTGGTGGAGCCATGCAATGATATCTGATCAAACATACAATCAACTTATTAGCACTTGTGATTTTCATCACCAAAAGGAATCTGATCAATGTGAATCTCTATATAGTTATGCCATGGATAAAGAATTTGGCAATATTGATCAGTACAATATCTATGCTCCTCCATGTAACCATTCCGATGGTAGCTCGTCCGGTACTCGCCACTCAATTCGGTTGCCCCACCTTCCTCATATGGCATTTAGGAAAATGGCTGGTTATGATCCATGCACAGAAAAATATGCAGAGGTTTATTACAATAGGCCTGATGTTCAGAAAGCACTACATGCTAACACAACTGGCATTCCTTATAAGTGGACTGCTTGCAGTGAAATTTTGAATAGAAATTGGAATGATACAGATGTATCTGTTCTTCCAATTTATAGAGAATTGATAGCTCATGGAGTAAGAGTTTGGGTTTTCAGTGGGGATGTAGACTCAGTGGTACCAGTAACAGCAACAAGATATGCACTTGCACAGCTTAAGTTGGCAACTAAAATACCATGGTATCCTTGGTATGTCAAAAATCAGGTTGGAGGTTGGACAGAAGTGTATCAAGGGCTAACATTTGCCACAGTGAGAGGGGCAGGTCATGAAGTGCCACTATTCAAACCAAGAGCAGCCCTTCAATTATTCAAATCATTCCTTGCAGGAAAGCCTCTTCCAAAAGTGCAAAAATAG	1419	0.4052	MEQRKNIFVHVVIFLVMVLLKGSANVVEGKGVAEEEKDRILELPGQPKVLFKQFSGYVTVNHEAGRALFYWLTEAQQNPLNKPLVIWLNGGPGCSSVAYGASEEIGPFRLNKTTSGLYINKFAWNTVANLLFLEAPAGVGFSYTNRSSDLLDTGDRRTAKDSLEFVIQWLERFPRYKNRELYITGESYAGHYVPQLAKEIMTYNIKAKQPINLKGIMVGNAVTDNYYDNLGTVTYWWSHAMISDQTYNQLISTCDFHHQKESDQCESLYSYAMDKEFGNIDQYNIYAPPCNHSDGSSSGTRHSIRLPHLPHMAFRKMAGYDPCTEKYAEVYYNRPDVQKALHANTTGIPYKWTACSEILNRNWNDTDVSVLPIYRELIAHGVRVWVFSGDVDSVVPVTATRYALAQLKLATKIPWYPWYVKNQVGGWTEVYQGLTFATVRGAGHEVPLFKPRAALQLFKSFLAGKPLPKVQK*	473

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Tpr6g3068	472	ProSitePatterns	Serine carboxypeptidases, serine active site.	183	190	IPR018202	GO:0004185
	Tpr6g3068	472	PRINTS	Carboxypeptidase C serine protease (S10) family signature	120	132	IPR001563	GO:0004185\|GO:0006508
	Tpr6g3068	472	PRINTS	Carboxypeptidase C serine protease (S10) family signature	133	143	IPR001563	GO:0004185\|GO:0006508
	Tpr6g3068	472	PRINTS	Carboxypeptidase C serine protease (S10) family signature	169	194	IPR001563	GO:0004185\|GO:0006508
	Tpr6g3068	472	PRINTS	Carboxypeptidase C serine protease (S10) family signature	434	447	IPR001563	GO:0004185\|GO:0006508
	Tpr6g3068	472	SUPERFAMILY	alpha/beta-Hydrolases	36	468	IPR029058	-
	Tpr6g3068	472	Gene3D	-	370	464	-	-
	Tpr6g3068	472	Pfam	Serine carboxypeptidase	47	463	IPR001563	GO:0004185\|GO:0006508
	Tpr6g3068	472	ProSitePatterns	Serine carboxypeptidases, histidine active site.	434	451	IPR033124	GO:0004185
	Tpr6g3068	472	PANTHER	SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE	15	469	IPR001563	GO:0004185\|GO:0006508
	Tpr6g3068	472	PANTHER	SERINE CARBOXYPEPTIDASE-LIKE 25	15	469	-	-
	Tpr6g3068	472	Gene3D	-	323	360	-	-
	Tpr6g3068	472	Gene3D	alpha/beta hydrolase	34	292	IPR029058	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Tpr6g3068	Tpr-Chr6	33317431	33325679	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Tpr6g3068	328	467	Calmodulin-binding Proteins	AT2G22960	31.206	1.88e-16	75.9

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Tpr6g3068	K16297		-	gmx:100807680	843.958