Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g3064 ATGGCAGCTTGTGTATTCATCGTTTCACAAGACGGTTCCGGAGATTTTCAAACGGTGCAAGAACCAATCGACGCCGTGCCGTTTGGTAACACACGACGGACTGTGATCCGGGTTTCTCCGGGAATCTACCGGCAACCGGTTTACGTTGCTAAAACCAAGAATTTCATCACTCTTGCTGGGTTGGGTCCTGAGGATACTGTGCTTACTTGGAATAACACTGCCACCAAAATCGAACACCATCAAGTACGCACATTTTCTTCCATGTTTTTATTATTTGGTGTAATGGGTTGTGGAACTGCCATTGTGGAAGGAGAGGACTTCATTGCAGATAATATTACTTTTGAGAATTCATCCCCCCAGGGTTCAGGACAGGCGGTGGCAATTAGAGTAACAGCAGATCGTTGTGCCTTCTATAATTGCAGGTTCCTTGGATGGCAGGACACACTGTATTTACATTACGGTAAACAATATTTGAAAGATTGCTATATCGAAGGAAGCGTGGACTTCATCTTTGGCAATAGCACTGCCCTTTTGGAGCACTGTCATATACACTGCAAGAGTGAAGGGTTCATAACCGCACAGGGTAGAAAATCATCACAGGAATCAACTGGTTATGTATTCTTGAGATGTGTTATCACAGGTAATGGAGGAAATTCATATGCGTATCTTGGACGACCGTGGGGACCTTTTGGAAGGGTGGTTTTTGCATACACTTACATGGATCCATGTATAAGACAAGTTGGTTGGGATAACTGGGGGAAAGTAAAGAATGAGAGGAGTGCTTGCTTTTATGAATACAGGTGTTTTGGACCTGGTTGCTGTCCAACCGATCGAGTAACATGGTGTAGAGAATTGGTGGATGAAGAAGCAGAGCAATTCATCATGCATCCATTCATTGATCCAGAACCAGATAGATCTTGGCTCGCTCAAAGAATGGGCTTGAGGGTTCCATATTCTGCTTAG 963 0.4424 MAACVFIVSQDGSGDFQTVQEPIDAVPFGNTRRTVIRVSPGIYRQPVYVAKTKNFITLAGLGPEDTVLTWNNTATKIEHHQVRTFSSMFLLFGVMGCGTAIVEGEDFIADNITFENSSPQGSGQAVAIRVTADRCAFYNCRFLGWQDTLYLHYGKQYLKDCYIEGSVDFIFGNSTALLEHCHIHCKSEGFITAQGRKSSQESTGYVFLRCVITGNGGNSYAYLGRPWGPFGRVVFAYTYMDPCIRQVGWDNWGKVKNERSACFYEYRCFGPGCCPTDRVTWCRELVDEEAEQFIMHPFIDPEPDRSWLAQRMGLRVPYSA* 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g3064 320 ProSitePatterns Pectinesterase signature 2. 163 172 IPR033131 -
Tpr6g3064 320 PANTHER PECTINESTERASE 1 319 - -
Tpr6g3064 320 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 1 319 - -
Tpr6g3064 320 Pfam Pectinesterase 7 300 IPR000070 GO:0030599|GO:0042545
Tpr6g3064 320 Gene3D - 3 314 IPR012334 -
Tpr6g3064 320 SUPERFAMILY Pectin lyase-like 2 303 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g3064 Tpr-Chr6 33271525 33275959 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g3064 5 311 Carbohydrate Esterase AT5G47500 37.736 9.48e-69 217
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g3064 K01051 - gmx:100795636 588.186