Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g3062 ATGTCAAGGAAGAGAAAAGTTTCTGAAACACTAGTTGAAGACATTAGTCCTTATGAAACAATCAAAGAGTGGAATGAAGTAATGAAGGAATCTACTCAATCTAGTTCACAAGGAACTAAAAACAGAAAGAGATTTGTTGGTGTTAGACAAAGACCATCAGGAAGATGGGTAGCTGAGATAAAAGATACCATTCAAAAGATAAGAGTTTGGTTAGGAACATATGATACAGCTGAAAAAGCTGCAAGAGCTTATGATGAAGCTGCATGTATACTTCGTGGTTCCAATACTCGAACTAATTTCTTACCTTCTTCTAAATCTTCCTCTAGTACTCATGTTCTTCCTTCAAAAATCATCAATCTCCTCCTTCAAAGACTTAAAGCAAGGACTTATCCTTGTGATTGCGGTCGCAACTGTGAATCTTTATATTGTGGTAAAATGCAGGAAAATGCTGCCGATACAGTTGTGATGCCATTGCTGAGGCCTAAAAATTCTTTATATTGTGGCCGGTACGAACCTTTTATTTGGGATAAAATGTGGGAAAATGAGGCCGATGCTGTCGAAAGTGAAGTTGCAATGTCGTTGCAGAGACCTCAAAATCCTTTATATTACGGTAAAATGCAGGAAAATGAGGCCAATGCGGTTGCAATTGCAATGCCGCATAGACCTCAAAATCCTTTATATTATGGTTACAATTGCAGTTTCGGACCGCAATTTAAAACCATTTCTTCTTCTTCCAACTCTTATTATATGAACAACAAACAAAAGCAACAAGGAGATGTATATGTAAATGAATCAACAAATATAACAAATGAACAATTTATAGATTTCTTTGATGGTCTTGAAGAAGATTATAGCACAAGTAACAACATTGAATTTTGTAATAGTAGTACTAGTGCACAAATTGATGACATTACCAGTGGTTTTGAATCATGTTTAACTGAAAAAGTTGAATCAATTTGCAAGGAAAAGGAAATGAACATAGAATGTAATTTAAGCTATGTGATGACACAAACTACATCAAGTGATGAAAAAGAGGAAGACATTGAAGAAAACATTGATTTGAGTTTCCAACAAAATTTTCAATTCCTTGACAATGTTAATGATGTTGCAATGAACTATTATTGTCCTTTTGATATTGAGGAGCATGTGGAGTTAGAGATCAATGATGATGATGAGTCTTCAATGCTAAGAAATGCTATGAAGAGAATGAAATATGAGAGGAAAATTTCAGCTTCTCTGTATGCATTCAATGGAATACCTGAATGCTTGAAGTTGAAACTTGGATCAGAAAACAAAGCAATAGAGTTTTCTAATGAACTAACCAACCTCAAAATGGCTTGTAACAAAAACAAAATTGATGCTTAG 1365 0.3443 MSRKRKVSETLVEDISPYETIKEWNEVMKESTQSSSQGTKNRKRFVGVRQRPSGRWVAEIKDTIQKIRVWLGTYDTAEKAARAYDEAACILRGSNTRTNFLPSSKSSSSTHVLPSKIINLLLQRLKARTYPCDCGRNCESLYCGKMQENAADTVVMPLLRPKNSLYCGRYEPFIWDKMWENEADAVESEVAMSLQRPQNPLYYGKMQENEANAVAIAMPHRPQNPLYYGYNCSFGPQFKTISSSSNSYYMNNKQKQQGDVYVNESTNITNEQFIDFFDGLEEDYSTSNNIEFCNSSTSAQIDDITSGFESCLTEKVESICKEKEMNIECNLSYVMTQTTSSDEKEEDIEENIDLSFQQNFQFLDNVNDVAMNYYCPFDIEEHVELEINDDDESSMLRNAMKRMKYERKISASLYAFNGIPECLKLKLGSENKAIEFSNELTNLKMACNKNKIDA* 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g3062 454 Pfam AP2 domain 44 93 IPR001471 GO:0003700|GO:0006355
Tpr6g3062 454 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 4 136 - -
Tpr6g3062 454 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 262 436 - -
Tpr6g3062 454 SUPERFAMILY DNA-binding domain 44 101 IPR016177 GO:0003677
Tpr6g3062 454 CDD AP2 43 100 IPR001471 GO:0003700|GO:0006355
Tpr6g3062 454 Gene3D AP2/ERF domain 43 101 IPR036955 GO:0003700|GO:0006355
Tpr6g3062 454 PRINTS Ethylene responsive element binding protein signature 45 56 IPR001471 GO:0003700|GO:0006355
Tpr6g3062 454 PRINTS Ethylene responsive element binding protein signature 67 83 IPR001471 GO:0003700|GO:0006355
Tpr6g3062 454 SMART rav1_2 44 107 IPR001471 GO:0003700|GO:0006355
Tpr6g3062 454 ProSiteProfiles AP2/ERF domain profile. 44 101 IPR001471 GO:0003700|GO:0006355
Tpr6g3062 454 PANTHER AP2/ERF DOMAIN TRANSCRIPTION FACTOR 4 136 - -
Tpr6g3062 454 PANTHER AP2/ERF DOMAIN TRANSCRIPTION FACTOR 262 436 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g3062 Tpr-Chr6 33259639 33261003 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g3062 29 121 AP2-EREBP Transcription Factor Family AT5G19790 65.591 6.95e-32 120
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Tpr6g3062 AP2 2.8e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g3062 K09286 - gmx:100796159 177.178