Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g3054 ATGGCATCATCATCAATCAATAACCGCAAACCAAGTGAAATTTTCAAAGCACAAGCCCAATTATACAAACACATGTATGCCCACATAGATTCCATGACTCTTAAATGGTCAATTGAAATGAACATACCAAACATAATCCACAATCATGGCAAACCAATTTCTCTTTCAAACTTAGTTTCAATTCTTCAAATTCCATCATCGAAAATCGATAACGTGCAACGTCTCATGCGTTACCTTGCGCACAACGGATTCTTCGAGATAATAAAAAATCAAGAATTGGAAAATGAAGATGAAAAAGAAGAAGAGGCTTATGCTCTCACTATTGTTTCAGAGCTTCTTGTTAAAGGAAGTGAACTTTGTTTAGCTCCAATGGTTGAGTGTGCTCTTGATCCAACATTTTCATCTTCATTTCATAAGTTCAAGAAATGGATTTATGAAGAAGATCTTACACTCTTTGGTGTTAATTTAGGATCGGATTTTTGGGAATTTCTTAATGAAAATCCTAAATATAATACAATGTTCAATGATGCAATGGCTAGTGATTCCAAAATGATAAATTTGGCATTGAAAGATTGTGATTTTGTGTTTGAAGGGTTGGAATCAATTGTTGATGTTGGTGGTGGAAATGGAACAACAGCTAAGATTATTTGTGACAAATTTCCTAAGTTGAAATGTGTTGTGTTTGATAGACCAAAGGTAGTTGAGAATTTATCTCAAAGTGGTAATTTGACTTATGTTGATGGGGACATGTTCACATATGTTCCTAAAGCTGATGCTGTTTTGCTTAAGTGGATCTTACATGATTGGACTTCTAAGGATTGTATAAGGATACTGAAAAAATGTAAAGAAGCTGTTACAAGTGATGGAAAAAGAGGAAAAGTGATTGTGATAGATATGGTGATAAATGAAAAGAAAGAAGATAAGCAACTTACAGAAATAAAGCTCCTTATGAATGTATCAATTTCATGTCTTAATGGAAAAGAGAGAACTGAGAAAGAATGGAAGAAACTCTTCATAGAAGCAGGGTAA 1029 0.3362 MASSSINNRKPSEIFKAQAQLYKHMYAHIDSMTLKWSIEMNIPNIIHNHGKPISLSNLVSILQIPSSKIDNVQRLMRYLAHNGFFEIIKNQELENEDEKEEEAYALTIVSELLVKGSELCLAPMVECALDPTFSSSFHKFKKWIYEEDLTLFGVNLGSDFWEFLNENPKYNTMFNDAMASDSKMINLALKDCDFVFEGLESIVDVGGGNGTTAKIICDKFPKLKCVVFDRPKVVENLSQSGNLTYVDGDMFTYVPKADAVLLKWILHDWTSKDCIRILKKCKEAVTSDGKRGKVIVIDMVINEKKEDKQLTEIKLLMNVSISCLNGKERTEKEWKKLFIEAG* 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g3054 342 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 119 342 IPR029063 -
Tpr6g3054 342 PIRSF O-mtase 1 342 IPR016461 GO:0008168
Tpr6g3054 342 Gene3D - 2 113 IPR036388 -
Tpr6g3054 342 PANTHER O-METHYLTRANSFERASE 3 342 IPR016461 GO:0008168
Tpr6g3054 342 SUPERFAMILY "Winged helix" DNA-binding domain 11 117 IPR036390 -
Tpr6g3054 342 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 22 342 IPR016461 GO:0008168
Tpr6g3054 342 PANTHER FLAVONOID 4'-O-METHYLTRANSFERASE 3 342 - -
Tpr6g3054 342 Gene3D Vaccinia Virus protein VP39 114 342 IPR029063 -
Tpr6g3054 342 Pfam Dimerisation domain 32 80 IPR012967 GO:0046983
Tpr6g3054 342 Pfam O-methyltransferase domain 138 342 IPR001077 GO:0008171
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g3054 Tpr-Chr6 33178958 33180988 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g3054 1 342 Monolignol Biosynthesis Gene Families AT5G54160 29.630 2.01e-46 159
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g3054 K22588 K13262 ag:AAC49926 555.444